Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k13
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.062
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 29 1.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 1.0
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 29 1.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.3
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 27 3.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 27 4.1
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 7.2
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 9.5
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.7 bits (71), Expect = 0.062
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +1
Query: 454 SKILSVLLSNSCVLRSSHS-LNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKS 630
S + SVL S+S + SS S + S T + S + +P+ ++ S S +L S + + S
Sbjct: 533 SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTS 591
Query: 631 TSIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDS 795
SI +T+ S + SSS +S++ L +P + + S IIS S
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGS 646
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 386 DIITNFLNTKLDCRYDCADEYIKPNCIVDTYNCCNLVF 273
D+++ ++K D + D D + N + + YNC N+ F
Sbjct: 63 DLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFF 100
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 273 QKRNMNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 97
+K M D T RL+ + + +++ Y NSD DYT+ ++PG F E +
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETETI 1183
Query: 96 T 94
+
Sbjct: 1184 S 1184
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2
Query: 249 VDAVTKLIRLQNDVLDMMREVDQYL 175
+D + +IRL ND++ +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 548 EVLRSIFVDEPFKLWLERNTHEFDNN 471
EV+ IF +K W E NT F N+
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSND 343
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 252 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 142
S+D +L L NDVL V++ LNS PD +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 791 SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 681
SDI +T + P G N + KV + +EDE D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -2
Query: 297 VQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 160
+ +L++SF + +++ SV A + L+++VLD+ + + + D P
Sbjct: 567 ITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 184 VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 297
V+ HHVQ + NE+ +V ++ ++ K+Q L+
Sbjct: 934 VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLH 971
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 653 YKCLKILVDFLVMYVSKETNMKEYEQVYTL 564
Y C+ + F++ +++KET E+V L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,810
Number of Sequences: 5004
Number of extensions: 66078
Number of successful extensions: 255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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