Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k13
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    29   3.3  
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838...    29   5.7  
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667...    28   9.9  
06_03_0232 - 18507872-18508792                                         28   9.9  

>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 264 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 130
           N+    +  T+L+RL+  +L   ++  ++++N D PD+T+    AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503


>01_01_1062 +
           8381281-8381490,8382353-8382449,8382546-8382637,
           8382729-8382860,8382975-8383160,8383244-8383407,
           8383514-8383592,8384484-8384612,8385102-8385229,
           8385348-8385711
          Length = 526

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 788 DIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 633
           +I+K  +TD    +GD N   +++D  E    ++ L+       Y K +KIL
Sbjct: 438 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489


>10_02_0200 -
           6672743-6673717,6676257-6676634,6677017-6677301,
           6677420-6677570,6677696-6677930,6678689-6678764
          Length = 699

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
 Frame = -3

Query: 716 DANEDEYTVDGLKLKSKYVAYYKCLKILV-------DFLVMYVSKETNMKEYEQVYTLGR 558
           +++ D+Y +DG+++  K  +  K +K++V       D  V    KE  +++ + +   GR
Sbjct: 416 NSSRDDYVIDGMRIYVKIPSIAKTIKLIVKNSNSVADVKVEIERKEGILQDNQMLMYAGR 475

Query: 557 QL 552
           QL
Sbjct: 476 QL 477


>06_03_0232 - 18507872-18508792
          Length = 306

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 608 SKETNMKEYEQVYTLGRQLYEVLRSIFVDEPFKLWLERNTHEFDNNTD 465
           SKE +    ++VY    + YE  R++  + P   + E ++H  D++ D
Sbjct: 211 SKEVSDDSEDEVYVDPLEAYEAARNVAGEGPSTYFNEESSHSDDDDND 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,774
Number of Sequences: 37544
Number of extensions: 389887
Number of successful extensions: 1225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)