Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k11
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.027
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.063
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.34
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 1.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 4.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 5.5
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 26 7.3
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 9.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.9 bits (74), Expect = 0.027
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLS-VCIVSLYVSTEPLGPSAIEISVTLFTIKPLFL 287
SS+ IT + VL+ + +A+NT + + S+ S+ P+ S++ S T T +
Sbjct: 428 SSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 487
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + + SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 488 TSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLN 547
Query: 459 SS---RDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRAWRAANA 596
SS +V+ T + SS L+S T TSS + + + N+
Sbjct: 548 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNS 596
Score = 32.3 bits (70), Expect = 0.084
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 7/193 (3%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIEISVTLFTIKPLFL 287
SS+ IT + L+ + S +N+ + S V+T P+ S++ S T T +
Sbjct: 2864 SSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVN 2923
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + + SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 2924 TSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLN 2983
Query: 459 SS---RDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQNL 629
SS +V+ T + SS L+S T TSS + + + N+ S S L
Sbjct: 2984 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNS-STPITSSTAL 3042
Query: 630 NFIVDV*NDLIFN 668
N + + + N
Sbjct: 3043 NTSTPITSSTVLN 3055
Score = 29.9 bits (64), Expect = 0.45
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Frame = +3
Query: 72 SFPISSIFLYAFFSSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIE 248
S PI+S A +S+ IT + VL+ + S +N+ + S ++T P+ S++
Sbjct: 621 STPITSST--ALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVL 678
Query: 249 ISVTLFTIKPLFLT---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHAC 419
S T T T + S SST + A TP TS S ++ + P A
Sbjct: 679 NSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTAL 738
Query: 420 FSTQRMTAAALAHSS---RDE*LVSFKTSMMLSSELSSCTFCTSS 545
++ +T++++ +SS +++ T + SS L+S T TSS
Sbjct: 739 NTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSS 783
Score = 29.9 bits (64), Expect = 0.45
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIEIS---VTLFTIKP 278
+S+ IT + L+ + S +N+ + S V+T P+ S + S +T T+
Sbjct: 2768 TSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLN 2827
Query: 279 LFLTFSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
+ S SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 2828 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLN 2887
Query: 459 SS---RDE*LVSFKTSMMLSSELSSCTFCTSS 545
SS +V+ T + SS L+S T TSS
Sbjct: 2888 SSTPITSSTVVNTSTPITSSSVLNSSTPITSS 2919
Score = 29.5 bits (63), Expect = 0.59
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIEISVTLFTIKPLFL 287
SS+ IT + VL+ + S +N+ + S ++T P+ S++ S T T +
Sbjct: 992 SSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVN 1051
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + + SST + A TP TS S ++ + P S+ +T++++ +
Sbjct: 1052 TSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSSVLN 1111
Query: 459 SSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRA 578
SS ++ T + S+ ++S T +S I + +L +
Sbjct: 1112 SSTP---ITSSTVVNTSTPITSSTALNTSTPITSSSVLNS 1148
Score = 29.5 bits (63), Expect = 0.59
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYV--STEPLGPSAIEISVTLFTIKPLF 284
SS+ IT + V++ + + +N+ S I SL S+ P+ S++ S T T +
Sbjct: 2540 SSTPITSSTVVNTSTPITSSTVVNS-STPITSLTALNSSTPITSSSVLNSSTPITSSTVV 2598
Query: 285 LT---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALA 455
T + + SST + A TP TS S ++ + P A ++ +T++++
Sbjct: 2599 NTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVL 2658
Query: 456 HSS---RDE*LVSFKTSMMLSSELSSCTFCTSS 545
+SS +V+ T + SS L+S T TSS
Sbjct: 2659 NSSTPITSSTVVNTSTPITSSSVLNSSTPITSS 2691
Score = 28.3 bits (60), Expect = 1.4
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTEPLGPSAIEISVTLFTIKPLFLT 290
SS++IT + +L+ + S +N+ + S V++ + I S L T P+ +
Sbjct: 3344 SSTAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSS----TPITSSTALNTSTPITSS 3399
Query: 291 FSL*SCAP--------SSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAA 446
L S P SST + A TP TS + V+ + P S+ + ++
Sbjct: 3400 SVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASS 3459
Query: 447 ALAHSSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLL 572
++ +SS ++ + + S+ +SS T TSS+ I + +L
Sbjct: 3460 SILNSSTP---ITSSSVLNSSTPISSSTVITSSVVIGSSSVL 3498
Score = 27.9 bits (59), Expect = 1.8
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIEISVTLFTIKPLFL 287
SS+ IT + V++ + S +N+ + S ++T P+ S++ S T T
Sbjct: 1556 SSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALN 1615
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + S SST + TP TS + ++ +PP S+ +T++ + +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 459 SS---RDE*LVSFKTSMMLSSELSSCTFCTSS 545
+S +V+ T + S+ L++ T TSS
Sbjct: 1676 TSTPITSSTVVNSSTPITSSTALNTSTPITSS 1707
Score = 27.9 bits (59), Expect = 1.8
Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 4/168 (2%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYV-STEPLGPSAIEISVTLFTIKPLFL 287
SS+ IT + L+ + S +N+ + S V S+ P+ S++ S T T +
Sbjct: 3068 SSTPITSSTALNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILN 3127
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
+ + S SST + TP TS + ++ + P S+ +T++++ +
Sbjct: 3128 SSTPITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSIVN 3187
Query: 459 SSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRAWRAANAHS 602
SS ++ + + S+ ++S T +S I + +L + A + S
Sbjct: 3188 SSTP---ITSSSVLNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS 3232
Score = 27.5 bits (58), Expect = 2.4
Identities = 33/158 (20%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLS-VCIVSLYVSTEPLGPSAI---EISVTLFTIKP 278
+S+ IT + V++ + +A+NT + + S+ S+ P+ S + +T T+
Sbjct: 1676 TSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVN 1735
Query: 279 LFLTFSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
+ + SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 1736 SSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 1795
Query: 459 SSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLL 572
SS ++ T++ S+ ++S + SS I + ++
Sbjct: 1796 SSTP---ITSSTALNTSTPITSSSVLNSSTPITSSTVV 1830
Score = 27.5 bits (58), Expect = 2.4
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIEISVTLFTIKPLFL 287
SS+ IT + L+ + S +N+ + S ++T P+ S++ S T T +
Sbjct: 1772 SSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVN 1831
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + + SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 1832 TSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 1891
Query: 459 SSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRA 578
SS ++ T + S+ ++S T +S I + +L +
Sbjct: 1892 SSTP---ITSSTVLNSSTPITSSTALNTSTPITSSSVLNS 1928
Score = 27.5 bits (58), Expect = 2.4
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTE-PLGPSAIEISVTLFTIKPLFL 287
SS+ IT + L+ + S +N+ + S ++T P+ S++ S T T +
Sbjct: 1964 SSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTPITSSTVVN 2023
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + + SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 2024 TSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 2083
Query: 459 SSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRA 578
SS ++ T + S+ ++S T +S I + +L +
Sbjct: 2084 SSTP---ITSSTVLNSSTPITSSTALNTSTPITSSSVLNS 2120
Score = 26.2 bits (55), Expect = 5.5
Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 4/160 (2%)
Frame = +3
Query: 111 SSSSITLA*VLSIRSFFRFCSAINTLS-VCIVSLYVSTEPLGPSAIEISVTLFTIKPLFL 287
+S+ IT + V++ + + +NT + + S+ S+ P+ S++ S T T +
Sbjct: 1508 TSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 1567
Query: 288 T---FSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAH 458
T + S SST + A TP TS S ++ + P A ++ +T++++ +
Sbjct: 1568 TSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 1627
Query: 459 SSRDE*LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRA 578
SS ++ T + S+ ++S T +S I + ++ +
Sbjct: 1628 SSTP---ITSSTVLNSSTPITSSTALNTSPPITSSTVVNS 1664
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.063
Identities = 46/159 (28%), Positives = 71/159 (44%)
Frame = +3
Query: 72 SFPISSIFLYAFFSSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTEPLGPSAIEI 251
S SS + SSSS+ + S S S++ + S SL S+ S
Sbjct: 74 SLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSL-ASSSTTSSSLASS 132
Query: 252 SVTLFTIKPLFLTFSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQ 431
S+T ++ +T S S A SSTTS+ ++A + +TS + S A S
Sbjct: 133 SITSSSLASSSITSS--SLASSSTTSS-SLASSSTNSTTSATPTSSATSSSLSSTAASNS 189
Query: 432 RMTAAALAHSSRDE*LVSFKTSMMLSSELSSCTFCTSSL 548
T+++LA SS + + TS LSS +S + +SSL
Sbjct: 190 A-TSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSL 227
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.34
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 193 TDNVFIAEQNRKKLLIDKTQAKVMLEELKKAYKKMEE 83
T+ + E+N +KLL +K Q V LEEL Y K+ E
Sbjct: 1073 TNQLKYIEKNVQKLLDEKDQRNVELEELTSKYGKLGE 1109
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 190 DNVFIAEQNRKKLLIDKTQAKVMLEELKKAYKKMEEIGNETGNTS 56
D+V A Q ++ L D QAK++LEE +K ++ +E + S
Sbjct: 8 DSVKKASQFQRSLHSDPNQAKILLEERRKLLEEANSSADENDSHS 52
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.4
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
Frame = +3
Query: 72 SFPISSIFLYAFFSSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVSTEPLGPSAIEI 251
S P S+ + SSSS + + LS S S+ + S S +S+ PS+
Sbjct: 298 SSPTSTSSTISSSSSSSSSFSSTLSSSSMSS--SSSFSSSPTSSSSTISSSSSSPSSSSF 355
Query: 252 SVTLFTIKPLFLTFSL*SCAPSSTTSARAVAWARGT--PSTSRSRVS*APPQEQDHACFS 425
S T + K +FS + SST+S+ + + + P++S S S + + S
Sbjct: 356 SSTTSSSKSSS-SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS 414
Query: 426 TQRMTAAALAHSSRDE*LVSFKTSMMLSSELSSCTFCTSS 545
+ ++A H+S S +S LSS LSS T+S
Sbjct: 415 SSAPVSSAFYHNSTSSRSSSHSSSHSLSS-LSSKPILTAS 453
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +3
Query: 258 TLFTIKPLFLTFSL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRM 437
T FT T S S A SST+ A + +TS S VS PP + F+T +
Sbjct: 649 TTFTSSTSISTSSS-STATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFI 707
Query: 438 TAAALA 455
T+++L+
Sbjct: 708 TSSSLS 713
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 247 SIAEGPKGSVDTYKLTIHTDNVFIAEQNRKKLLIDKTQAKV 125
S+ E G V T +L + +N+ + E+N+KK + T+ +V
Sbjct: 589 SVEEDHFGEVRTVELITNGENIEVTEENKKKYVDLVTEWRV 629
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 428 PADDCRSPGAFVARRIISVFQDF 496
P ++ +S +FV RRI S+ QDF
Sbjct: 99 PLEESKSSMSFVTRRIQSMLQDF 121
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 240 QKVPKVQWTHINLQYTQITCLL 175
+ V KV WT+IN I CLL
Sbjct: 176 KNVTKVAWTYINDSTRSIACLL 197
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 712 KIKFSIRNLHLPA*ILNIRSFHTSTMKFKFCSDGDC 605
K FS+ ++ LP L + H F FC D C
Sbjct: 128 KSSFSVLDIGLPMSALQRKMMHRLVQYFAFCIDHFC 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,847
Number of Sequences: 5004
Number of extensions: 60768
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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