Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k11
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0062 + 17607290-17608852                                         30   2.5  
01_05_0236 + 19685569-19685661,19686509-19686775,19686854-196869...    29   4.4  
06_01_0454 - 3234331-3236299,3237254-3238074                           28   7.6  
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587...    28   7.6  

>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 328 DVVDEGAQDYKENVKNNGFMVNKVTDISIAEGP 230
           D+   GAQD    + ++GFMVN + +   A GP
Sbjct: 89  DIDLHGAQDIARQMVHDGFMVNLIREFDRAPGP 121


>01_05_0236 +
           19685569-19685661,19686509-19686775,19686854-19686940,
           19688637-19688681,19689029-19689064
          Length = 175

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 472 SSRDECARAAAVIRWVLKQAWSC 404
           SSR EC R A V+ WV+  A  C
Sbjct: 146 SSRSECMRIAMVLGWVIMVAQEC 168


>06_01_0454 - 3234331-3236299,3237254-3238074
          Length = 929

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -1

Query: 346 HATALADVVDEGAQDYKENVKNNGFMVNKVTDISI 242
           HA A AD +DE ++D+++ V++  + +    D+S+
Sbjct: 53  HALADADQLDELSKDWRDRVRDLAYDIEDCIDLSV 87


>02_05_0390 +
           28557722-28557937,28558440-28558514,28558597-28558766,
           28559046-28559124,28559320-28559516,28560300-28560387,
           28560453-28560679,28560763-28560919,28561467-28561517
          Length = 419

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 194 VYCKFICVH*TFGTFCY*NICHFIHHKAVILDIFFI 301
           VYC  + +  +  +FCY  +C+F H K    DI+ +
Sbjct: 242 VYCPRVAL--SLQSFCYTQLCYFFHKKKDENDIYLM 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,868,513
Number of Sequences: 37544
Number of extensions: 401397
Number of successful extensions: 1104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)