Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k11
(811 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533452-1|CAG38483.1| 199|Homo sapiens COMMD4 protein. 49 2e-05
BC068998-1|AAH68998.1| 199|Homo sapiens COMM domain containing ... 49 2e-05
AY542160-1|AAS22242.1| 199|Homo sapiens COMMD4 protein. 49 2e-05
AK000459-1|BAA91178.1| 140|Homo sapiens protein ( Homo sapiens ... 46 2e-04
BC000837-1|AAH00837.2| 139|Homo sapiens COMMD4 protein protein. 44 9e-04
X62949-1|CAA44721.1| 511|Homo sapiens vacuolar isoform 2 of H+A... 31 6.5
M60346-1|AAA35610.1| 406|Homo sapiens H+-ATPase B subunit protein. 31 6.5
M25809-1|AAA36498.1| 511|Homo sapiens protein ( Human endomembr... 31 6.5
L35249-1|AAA58661.1| 511|Homo sapiens vacuolar H+-ATPase 56,000... 31 6.5
BC063411-1|AAH63411.1| 513|Homo sapiens ATPase, H+ transporting... 31 6.5
BC030640-1|AAH30640.1| 511|Homo sapiens ATPase, H+ transporting... 31 6.5
BC007309-1|AAH07309.1| 501|Homo sapiens ATP6V1B2 protein protein. 31 6.5
BC003100-1|AAH03100.1| 511|Homo sapiens ATPase, H+ transporting... 31 6.5
AK223151-1|BAD96871.1| 513|Homo sapiens ATPase, H+ transporting... 31 6.5
AF107478-1|AAD11943.1| 426|Homo sapiens H+-ATPase beta 1 subuni... 31 6.5
BX537570-1|CAD97787.1| 1004|Homo sapiens hypothetical protein pr... 30 8.6
BC012191-1|AAH12191.1| 377|Homo sapiens hypothetical protein MG... 30 8.6
AY358485-1|AAQ88849.1| 402|Homo sapiens galactosyltransferase p... 30 8.6
AL392104-1|CAI40176.1| 1957|Homo sapiens Rho GTPase activating p... 30 8.6
AL355979-1|CAI14323.1| 1957|Homo sapiens Rho GTPase activating p... 30 8.6
AB037845-1|BAA92662.2| 1944|Homo sapiens KIAA1424 protein protein. 30 8.6
>CR533452-1|CAG38483.1| 199|Homo sapiens COMMD4 protein.
Length = 199
Score = 48.8 bits (111), Expect = 2e-05
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Frame = -1
Query: 637 MKFKFCSDGDCPXXXXXXXXXXXXXXXSIFRELVQKVQED----NSD-DSIMEVLKDTNY 473
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 472 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 293
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 292 NVKNNGFMVNKV------TDISIAEGPKGSVDT----YKLTIHTDNVFIAEQNRKKLLID 143
+++ +N++ D +++ SV+ +L + A+ L D
Sbjct: 120 HLRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSAD 179
Query: 142 KTQAKVMLEELKKAYKKMEEIG 77
K Q V+L ELK+A M +G
Sbjct: 180 KFQ--VLLAELKQAQTLMSSLG 199
>BC068998-1|AAH68998.1| 199|Homo sapiens COMM domain containing 4
protein.
Length = 199
Score = 48.8 bits (111), Expect = 2e-05
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Frame = -1
Query: 637 MKFKFCSDGDCPXXXXXXXXXXXXXXXSIFRELVQKVQED----NSD-DSIMEVLKDTNY 473
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 472 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 293
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 292 NVKNNGFMVNKV------TDISIAEGPKGSVDT----YKLTIHTDNVFIAEQNRKKLLID 143
+++ +N++ D +++ SV+ +L + A+ L D
Sbjct: 120 HLRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSAD 179
Query: 142 KTQAKVMLEELKKAYKKMEEIG 77
K Q V+L ELK+A M +G
Sbjct: 180 KFQ--VLLAELKQAQTLMSSLG 199
>AY542160-1|AAS22242.1| 199|Homo sapiens COMMD4 protein.
Length = 199
Score = 48.8 bits (111), Expect = 2e-05
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 15/202 (7%)
Frame = -1
Query: 637 MKFKFCSDGDCPXXXXXXXXXXXXXXXSIFRELVQKVQED----NSD-DSIMEVLKDTNY 473
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 472 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 293
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 292 NVKNNGFMVNKV------TDISIAEGPKGSVDT----YKLTIHTDNVFIAEQNRKKLLID 143
+++ +N++ D +++ SV+ +L + A+ L D
Sbjct: 120 HLRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSAD 179
Query: 142 KTQAKVMLEELKKAYKKMEEIG 77
K Q V+L ELK+A M +G
Sbjct: 180 KFQ--VLLAELKQAQTLMSSLG 199
>AK000459-1|BAA91178.1| 140|Homo sapiens protein ( Homo sapiens
cDNA FLJ20452 fis, clone KAT05695. ).
Length = 140
Score = 45.6 bits (103), Expect = 2e-04
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Frame = -1
Query: 637 MKFKFCSDGDCPXXXXXXXXXXXXXXXSIFRELVQKVQED----NSD-DSIMEVLKDTNY 473
M+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 472 SSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKE 293
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E ++
Sbjct: 61 ESGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQK 119
Query: 292 NVK 284
+++
Sbjct: 120 HLR 122
>BC000837-1|AAH00837.2| 139|Homo sapiens COMMD4 protein protein.
Length = 139
Score = 43.6 bits (98), Expect = 9e-04
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Frame = -1
Query: 634 KFKFCSDGDCPXXXXXXXXXXXXXXXSIFRELVQKVQED----NSD-DSIMEVLKDTNYS 470
+F+FC D DCP R L +V ++ D + I+++ D +
Sbjct: 1 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 60
Query: 469 SRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKEN 290
S D A AV+ ++L A S G L+ +L LG+P+ HA +L +E +++
Sbjct: 61 SGDVKA-TVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKH 119
Query: 289 VK 284
++
Sbjct: 120 LR 121
>X62949-1|CAA44721.1| 511|Homo sapiens vacuolar isoform 2 of
H+ATPase Mr 56,000 subunit protein.
Length = 511
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 239 ETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 297
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRG 322
>M60346-1|AAA35610.1| 406|Homo sapiens H+-ATPase B subunit protein.
Length = 406
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 134 ETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 192
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 193 TDMSSYAEALREVSAAREEVPGRRG 217
>M25809-1|AAA36498.1| 511|Homo sapiens protein ( Human endomembrane
proton pump subunit mRNA, complete cds. ).
Length = 511
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 231 ETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 289
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 290 TDMSSYAEALREVSAAREEVPGRRG 314
>L35249-1|AAA58661.1| 511|Homo sapiens vacuolar H+-ATPase 56,000
subunit protein.
Length = 511
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 239 ETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 297
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRG 322
>BC063411-1|AAH63411.1| 513|Homo sapiens ATPase, H+ transporting,
lysosomal 56/58kDa, V1 subunit B1 (Renal tubular acido
protein.
Length = 513
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 233 ETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 291
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 292 TDMSSYAEALREVSAAREEVPGRRG 316
>BC030640-1|AAH30640.1| 511|Homo sapiens ATPase, H+ transporting,
lysosomal 56/58kDa, V1 subunit B2 protein.
Length = 511
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 239 ETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 297
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRG 322
>BC007309-1|AAH07309.1| 501|Homo sapiens ATP6V1B2 protein protein.
Length = 501
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 229 ETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 287
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 288 TDMSSYAEALREVSAAREEVPGRRG 312
>BC003100-1|AAH03100.1| 511|Homo sapiens ATPase, H+ transporting,
lysosomal 56/58kDa, V1 subunit B2 protein.
Length = 511
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 239 ETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 297
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 298 TDMSSYAEALREVSAAREEVPGRRG 322
>AK223151-1|BAD96871.1| 513|Homo sapiens ATPase, H+ transporting,
lysosomal 56/58kD, V1 subunit B, isoform 1 variant
protein.
Length = 513
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 233 ETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 291
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 292 TDMSSYAEALREVSAAREEVPGRRG 316
>AF107478-1|AAD11943.1| 426|Homo sapiens H+-ATPase beta 1 subunit
protein.
Length = 426
Score = 30.7 bits (66), Expect = 6.5
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K + + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 197 ETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAE-FLAYQCEKHVLVIL 255
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 256 TDMSSYAEALREVSAAREEVPGRRG 280
>BX537570-1|CAD97787.1| 1004|Homo sapiens hypothetical protein
protein.
Length = 1004
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 388 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 224
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 684 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 743
Query: 223 SVDTYKLTIHTDNVF 179
S D+ + VF
Sbjct: 744 SEDSGSRKDSSSEVF 758
>BC012191-1|AAH12191.1| 377|Homo sapiens hypothetical protein
MGC4655 protein.
Length = 377
Score = 30.3 bits (65), Expect = 8.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 433 RWVLKQAWSCSCGGAQ--LTRDLLVLGVPRAHATALADVVDEGAQDY 299
R ++Q W G Q L R + +LGVPR + AD V EGA+ +
Sbjct: 107 RQAVRQTWGAE-GRVQGALVRRVFLLGVPRGAGSGGADEVGEGARTH 152
>AY358485-1|AAQ88849.1| 402|Homo sapiens galactosyltransferase
protein.
Length = 402
Score = 30.3 bits (65), Expect = 8.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 433 RWVLKQAWSCSCGGAQ--LTRDLLVLGVPRAHATALADVVDEGAQDY 299
R ++Q W G Q L R + +LGVPR + AD V EGA+ +
Sbjct: 132 RQAVRQTWGAE-GRVQGALVRRVFLLGVPRGAGSGGADEVGEGARTH 177
>AL392104-1|CAI40176.1| 1957|Homo sapiens Rho GTPase activating
protein 21 protein.
Length = 1957
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 388 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 224
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 854 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 913
Query: 223 SVDTYKLTIHTDNVF 179
S D+ + VF
Sbjct: 914 SEDSGSRKDSSSEVF 928
>AL355979-1|CAI14323.1| 1957|Homo sapiens Rho GTPase activating
protein 21 protein.
Length = 1957
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 388 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 224
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 854 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 913
Query: 223 SVDTYKLTIHTDNVF 179
S D+ + VF
Sbjct: 914 SEDSGSRKDSSSEVF 928
>AB037845-1|BAA92662.2| 1944|Homo sapiens KIAA1424 protein protein.
Length = 1944
Score = 30.3 bits (65), Expect = 8.6
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 388 QLTRDLLVLGVPRAHA-----TALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKG 224
QL+ D +G P A T + DEG DY+E+ K + V+ + I IA+ K
Sbjct: 841 QLSHDHESVGPPSLDAQPNSKTERSKSYDEGLDDYREDAKLSFKHVSSLKGIKIADSQKS 900
Query: 223 SVDTYKLTIHTDNVF 179
S D+ + VF
Sbjct: 901 SEDSGSRKDSSSEVF 915
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,787,087
Number of Sequences: 237096
Number of extensions: 2109301
Number of successful extensions: 4747
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4738
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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