Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k11
(811 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-2393|ABC66146.1| 197|Drosophila melanogaster CG34039-P... 65 1e-10
AY071506-1|AAL49128.1| 460|Drosophila melanogaster RE56061p pro... 31 1.4
AE014297-3027|AAF55909.2| 460|Drosophila melanogaster CG31176-P... 31 1.4
X67839-1|CAA48034.1| 490|Drosophila melanogaster vacuolar ATPas... 31 1.9
BT001302-1|AAN71057.1| 490|Drosophila melanogaster AT12604p pro... 31 1.9
AY051623-1|AAK93047.1| 490|Drosophila melanogaster GH27148p pro... 31 1.9
AE014297-1554|AAF54837.1| 490|Drosophila melanogaster CG17369-P... 31 1.9
AE014297-1553|AAF54836.1| 490|Drosophila melanogaster CG17369-P... 31 1.9
AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611 prot... 29 7.5
AY119249-1|AAM51109.1| 508|Drosophila melanogaster SD21513p pro... 29 9.9
AE014298-2428|AAF48627.1| 508|Drosophila melanogaster CG9784-PA... 29 9.9
>AE014296-2393|ABC66146.1| 197|Drosophila melanogaster CG34039-PA
protein.
Length = 197
Score = 64.9 bits (151), Expect = 1e-10
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 6/194 (3%)
Frame = -1
Query: 634 KFKFCSDGDCPXXXXXXXXXXXXXXXSI-FRELVQKVQEDNSDDSIMEV-LKDTNYSSRD 461
KF+FC +GDCP +L V + ++ E +K + +
Sbjct: 1 KFRFCGEGDCPDWVLAEIISTLSNLSIENLEQLSDLVAQRICGETFEEAKIKSLTSTLTN 60
Query: 460 ECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVVDEGAQDYKENVKN 281
E A A I ++L A SC + ++ LG+P+ HA A+ V+ + + ++ + N
Sbjct: 61 EGKTAVACINFMLTSAARYSCSESIFGEEIQQLGLPKDHAAAMCRVLQKHSATIRQTLIN 120
Query: 280 NGFMVNKVT---DISIAEGPKGSVDTYKLTIHTDNV-FIAEQNRKKLLIDKTQAKVMLEE 113
F +N++T DIS + T +L I + V + + L ID+TQ K +L E
Sbjct: 121 KSFRINELTSVRDISTPGQTPPNYATLELKISQELVDGLPKDTTHVLNIDRTQMKALLAE 180
Query: 112 LKKAYKKMEEIGNE 71
LK A M++ N+
Sbjct: 181 LKLARDVMQKYENK 194
>AY071506-1|AAL49128.1| 460|Drosophila melanogaster RE56061p
protein.
Length = 460
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 494 SLERH*LFVSRRM-RQGCGSHPLGTKTGVVLFLRGRSAHARPTGAGSAS 351
S+ H L S + G G+ LGT TG + RGR H P G S
Sbjct: 145 SVHNHRLTASMQQGSSGLGNSSLGTGTGTANYRRGRRLHVNPPRTGIRS 193
>AE014297-3027|AAF55909.2| 460|Drosophila melanogaster CG31176-PA
protein.
Length = 460
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 494 SLERH*LFVSRRM-RQGCGSHPLGTKTGVVLFLRGRSAHARPTGAGSAS 351
S+ H L S + G G+ LGT TG + RGR H P G S
Sbjct: 145 SVHNHRLTASMQQGSSGLGNSSLGTGTGTANYRRGRRLHVNPPRTGIRS 193
>X67839-1|CAA48034.1| 490|Drosophila melanogaster vacuolar ATPase B
subunit protein.
Length = 490
Score = 31.1 bits (67), Expect = 1.9
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K++ + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 219 ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLAL-TAAEFLAYQCEKHVLVIL 277
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRG 302
>BT001302-1|AAN71057.1| 490|Drosophila melanogaster AT12604p
protein.
Length = 490
Score = 31.1 bits (67), Expect = 1.9
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K++ + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 219 ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLAL-TAAEFLAYQCEKHVLVIL 277
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRG 302
>AY051623-1|AAK93047.1| 490|Drosophila melanogaster GH27148p
protein.
Length = 490
Score = 31.1 bits (67), Expect = 1.9
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K++ + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 219 ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLAL-TAAEFLAYQCEKHVLVIL 277
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRG 302
>AE014297-1554|AAF54837.1| 490|Drosophila melanogaster CG17369-PB,
isoform B protein.
Length = 490
Score = 31.1 bits (67), Expect = 1.9
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K++ + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 219 ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLAL-TAAEFLAYQCEKHVLVIL 277
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRG 302
>AE014297-1553|AAF54836.1| 490|Drosophila melanogaster CG17369-PA,
isoform A protein.
Length = 490
Score = 31.1 bits (67), Expect = 1.9
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K++ + NG M N +++A P + T +L + T F+A Q K +L+
Sbjct: 219 ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLAL-TAAEFLAYQCEKHVLVIL 277
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRG 302
>AB235207-1|BAF31332.1| 1089|Drosophila melanogaster CG32611
protein.
Length = 1089
Score = 29.1 bits (62), Expect = 7.5
Identities = 32/110 (29%), Positives = 48/110 (43%)
Frame = +3
Query: 294 SL*SCAPSSTTSARAVAWARGTPSTSRSRVS*APPQEQDHACFSTQRMTAAALAHSSRDE 473
+L + A + +A A A A STS S S A A ++ TAAA S+
Sbjct: 157 ALDATAATQAATATATATAAAATSTSTSATSAAATAAATAATSASTTATAAA-GSSNTTT 215
Query: 474 *LVSFKTSMMLSSELSSCTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQ 623
+ T+ ++ S+ T TSS + A AA+A SG + SE+
Sbjct: 216 TTAATTTATCATAATSTSTAATSSSSSVTSAAAAAAAAASA-SGVAHSEE 264
>AY119249-1|AAM51109.1| 508|Drosophila melanogaster SD21513p
protein.
Length = 508
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 349 AHATALADVVDEGAQDYKENVKNNGFMVNKVTDI 248
AH TA ++DE +DYK+ ++N+ + V + +I
Sbjct: 176 AHLTAHDHMMDERIEDYKQILENHHYHVKRYREI 209
>AE014298-2428|AAF48627.1| 508|Drosophila melanogaster CG9784-PA
protein.
Length = 508
Score = 28.7 bits (61), Expect = 9.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 349 AHATALADVVDEGAQDYKENVKNNGFMVNKVTDI 248
AH TA ++DE +DYK+ ++N+ + V + +I
Sbjct: 176 AHLTAHDHMMDERIEDYKQILENHHYHVKRYREI 209
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,462,726
Number of Sequences: 53049
Number of extensions: 673607
Number of successful extensions: 1803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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