Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k11
(811 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 32 0.56
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 32 0.56
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 32 0.56
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 32 0.56
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 1.7
Z83105-11|CAB05485.2| 345|Caenorhabditis elegans Hypothetical p... 29 3.9
DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein. 29 3.9
AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical ... 29 3.9
Z69383-7|CAJ90501.1| 277|Caenorhabditis elegans Hypothetical pr... 29 5.2
AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical ... 29 5.2
AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical ... 28 6.9
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = -1
Query: 349 AHATALADVVDEGAQDYKENVKNNGFM--VNKVTDISIAEGPKGSVDTYKLTIHT----D 188
A ++ A++ +E ++ + G + V+K +I + K ++ KLT +
Sbjct: 908 AESSERAEIFEERSRMAARRDELEGILEEVSKRLEIEEQKAKKADSESRKLTEMVRHLEE 967
Query: 187 NVFIAEQNRKKLLIDKTQAKVMLEELKKAYKKMEEIGNE 71
N+ E++R+KLL++K + L+EL+ ++E+ GN+
Sbjct: 968 NLEDEERSRQKLLLEKNSIESRLKELEAQGLELEDSGNK 1006
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = -1
Query: 349 AHATALADVVDEGAQDYKENVKNNGFM--VNKVTDISIAEGPKGSVDTYKLTIHT----D 188
A ++ A++ +E ++ + G + V+K +I + K ++ KLT +
Sbjct: 908 AESSERAEIFEERSRMAARRDELEGILEEVSKRLEIEEQKAKKADSESRKLTEMVRHLEE 967
Query: 187 NVFIAEQNRKKLLIDKTQAKVMLEELKKAYKKMEEIGNE 71
N+ E++R+KLL++K + L+EL+ ++E+ GN+
Sbjct: 968 NLEDEERSRQKLLLEKNSIESRLKELEAQGLELEDSGNK 1006
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = -1
Query: 349 AHATALADVVDEGAQDYKENVKNNGFM--VNKVTDISIAEGPKGSVDTYKLTIHT----D 188
A ++ A++ +E ++ + G + V+K +I + K ++ KLT +
Sbjct: 908 AESSERAEIFEERSRMAARRDELEGILEEVSKRLEIEEQKAKKADSESRKLTEMVRHLEE 967
Query: 187 NVFIAEQNRKKLLIDKTQAKVMLEELKKAYKKMEEIGNE 71
N+ E++R+KLL++K + L+EL+ ++E+ GN+
Sbjct: 968 NLEDEERSRQKLLLEKNSIESRLKELEAQGLELEDSGNK 1006
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 31.9 bits (69), Expect = 0.56
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = -1
Query: 316 EGAQDYKENVKNNGFMVNKVTDISIAEGPK-GSVDTYKLTIHTDNVFIAEQNRKKLLIDK 140
E A+ +K++ + NG M N +++A P + T ++ + T F+A Q +K +L+
Sbjct: 219 ETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIAL-TSAEFLAYQCKKHVLVVL 277
Query: 139 TQAKVMLEELKKAYKKMEEIGNETG 65
T E L++ EE+ G
Sbjct: 278 TDMSSYAEALREVSAAREEVPGRRG 302
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = -1
Query: 352 RAHATALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKGSVDTYKLTIHTDNVFIA 173
+ HA + DV+ D E +KN GF D A K + +K+ +V++
Sbjct: 302 KTHAEGVVDVIVYSVPD-NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVD 360
Query: 172 EQNRKKLLIDKTQAKV---MLEELKKAY--KKMEEIGNETGNTS*IFKEHNY 32
++ + T +KV + +K+A +K+ E+ E + + K +Y
Sbjct: 361 WAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDY 412
>Z83105-11|CAB05485.2| 345|Caenorhabditis elegans Hypothetical
protein F14H3.11 protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 166 NRKKLLIDKTQAKVMLEELKKAYKKMEEIGNETGN 62
+RK + K +LEEL++AY K+E NET N
Sbjct: 82 SRKAIYSISNFEKSILEELEEAYSKLEHGRNETFN 116
>DQ338465-1|ABC67522.1| 690|Caenorhabditis elegans KEL-8 protein.
Length = 690
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 376 DLLVLG-VPRAHATALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKGSVDTYKLT 200
+LLV G V RAH LA A Y + + NG + K I + + P+ SV
Sbjct: 114 ELLVAGSVIRAHRYILA-----AASPYFKAMFTNGMVEMKKLTIELQDIPEESVRIIVDY 168
Query: 199 IHTDNVFIAEQNRKKLLIDKT 137
I+TD + I N +L+ T
Sbjct: 169 IYTDKIAITMNNVHQLIFTAT 189
>AF067946-5|AAC17684.4| 690|Caenorhabditis elegans Hypothetical
protein W02G9.2 protein.
Length = 690
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 376 DLLVLG-VPRAHATALADVVDEGAQDYKENVKNNGFMVNKVTDISIAEGPKGSVDTYKLT 200
+LLV G V RAH LA A Y + + NG + K I + + P+ SV
Sbjct: 114 ELLVAGSVIRAHRYILA-----AASPYFKAMFTNGMVEMKKLTIELQDIPEESVRIIVDY 168
Query: 199 IHTDNVFIAEQNRKKLLIDKT 137
I+TD + I N +L+ T
Sbjct: 169 IYTDKIAITMNNVHQLIFTAT 189
>Z69383-7|CAJ90501.1| 277|Caenorhabditis elegans Hypothetical
protein F13E9.13 protein.
Length = 277
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -1
Query: 289 VKNNGFMVNKVTDISIAEGPKGSVDTYKLTIHTDNVFIAEQNRKKLLIDKTQAKVMLEEL 110
++ GF+ + V D +G G + Y+ ++ +N+ I +KK + V + E+
Sbjct: 126 IRAEGFVYSHVADEGWIDGCAGGLLRYRSSLKAENIAIFTDIKKKHSAHSVTSDVSIHEM 185
Query: 109 KKAYK 95
K K
Sbjct: 186 AKDAK 190
>AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical
protein T28F2.2 protein.
Length = 175
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 493 VLKDTN--YSSRDECARAAAVIRWVLKQAWSCSCGGAQLTRDLLVLGVPRAHATALADVV 320
+L DT+ +S + + W+L + C L ++++ LG+P H L V
Sbjct: 42 ILSDTSEGINSVNNHTNLVLIGNWLLLKPAGYDCPSTDLEKEVVQLGLPPEHGIQLRKVY 101
Query: 319 DEGAQDYKENV 287
+ + +E V
Sbjct: 102 ENYKSELREKV 112
>AL023844-8|CAA19534.1| 396|Caenorhabditis elegans Hypothetical
protein Y48A6B.13 protein.
Length = 396
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 355 PRAHATALADVVDEGAQDYKENVKN 281
P AH+T LAD +D ++ +NVK+
Sbjct: 167 PAAHSTTLADFIDSTKKETHKNVKH 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,910
Number of Sequences: 27780
Number of extensions: 350516
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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