Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k11
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 525 CTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQNLN 632
           C+F   S++ E   +   W+       +SPS  +LN
Sbjct: 200 CSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLN 235


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 525 CTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQNLN 632
           C+F   S++ E   +   W+       +SPS  +LN
Sbjct: 200 CSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLN 235


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 525 CTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQNLN 632
           C+F   S++ E   +   W+       +SPS  +LN
Sbjct: 251 CSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLN 286


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 525 CTFCTSSLNIEAGRLLRAWRAANAHSGQSPSEQNLN 632
           C+F   S++ E   +   W+       +SPS  +LN
Sbjct: 200 CSFAIESISYEQTAITYVWKNDEGTLRKSPSLTSLN 235


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 346 HATALADVVDEGAQDYKENVK 284
           HAT L   +D   + Y+E VK
Sbjct: 373 HATNLIQSLDSSRRQYREKVK 393


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 346 HATALADVVDEGAQDYKENVK 284
           HAT L   +D   + Y+E VK
Sbjct: 341 HATNLIQSLDSSRRQYREKVK 361


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 102 AFFSSSSITLA*VLSIRSFFRFCSAINTLSVCIVSLYVS 218
           AF S + I L  ++ + SFF  C AI   S C+   + S
Sbjct: 49  AFPSITLIVLGSIIFVISFFGCCGAIRE-SHCMTITFAS 86


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 438 SSAGY*NRRGLVLAGALSSRETYWCWE 358
           SS    +R G++    ++ R++ WCW+
Sbjct: 436 SSGSVIDRNGVMFFNMVT-RDSVWCWD 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,391
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)