Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k09
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 29 0.79
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 29 1.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 27 2.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 3.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 4.2
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 4.2
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 7.4
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 25 9.8
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 399 WAHLLPVLKMIKEKFRKVDGIHFWSDGPTVQYKQKKNFYYFSKLTRELDFP 247
W+ + P+LK ++E+ + + SDGP Y K F Y D+P
Sbjct: 442 WSLVDPLLKYMEEEKPVPEPYEYGSDGPECLYSFLKKFGYIYDSPDYYDYP 492
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 494 RHQISIHTGILYSEKGNQSFASMSPNKDHGLSG 396
RH S ++ YS GN S++S N+D+ SG
Sbjct: 105 RHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSG 137
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 594 FSASAVFFILMEDIVQMD-FEILQFFLKTIYKGL**SSFTLFIYSLGSLCLIVILFRPIL 770
FS S +FF+ IV F IL F + L F F++SL L + ILF P+L
Sbjct: 131 FSFSFLFFLSQIFIVYFSSFPILHFLF---FFFLCVCVFLSFLFSLSHLLSLAILFLPLL 187
Query: 771 M 773
+
Sbjct: 188 L 188
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 584 SHTVALHIDFSENYA-CKLAKEIQAMHFDGSRHQISIHTGILYSEKGNQSFASMSPNKDH 408
S+ A + F+ N +L + +H D +S HTG L + F SM+ + +
Sbjct: 245 SYNFANVLGFANNEEFVELMRLYLTIHADHEGGNVSAHTGHLVGSALSSPFLSMAASL-N 303
Query: 407 GLSGPI 390
GL+GP+
Sbjct: 304 GLAGPL 309
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 680 DSFQKELKDFKIHLYNIFHQYKEYCRCT 597
D+ QK + K LY + QYK+ RC+
Sbjct: 841 DTSQKYQSELKNELYALLEQYKKQLRCS 868
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 225 ESAHGKGAADGVGGPIKRNLDAFVAYCMDVPDAKTAFNLLEQSDTKIQLFYIPQNF 58
E K + + P+K +DAFVA D + + ++ S T + PQ+F
Sbjct: 879 EEGMAKAREEAIANPLKYAIDAFVAV-----DHEEEVSAIKSSQTPSSILKTPQSF 929
>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 250
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 539 RRNFLKNLCVMLQCGY 586
RR+ +KNLC+ L C Y
Sbjct: 50 RRSEMKNLCIQLYCSY 65
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 755 KNNDETKTTKRVDKESKTGSLQTLIDSFQKELKDFKIHL 639
K DE + D E + Q L +QKEL FK+ L
Sbjct: 1719 KQIDEFHVIRVQDLEEREKKDQLLFQRYQKELNGFKVQL 1757
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 79 FLYSTKFYDRMYRSCTSSQDNETT 8
F++ST+F +++YR T QD TT
Sbjct: 105 FIFSTRFQNKLYR--TLPQDKRTT 126
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 137 CQTQKQHLTFLSNQIPRYNFFIFHKIL 57
C+ +K+ + LS +I Y+F FH I+
Sbjct: 69 CRLKKKFIKSLSKKIISYHFISFHTIV 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,165
Number of Sequences: 5004
Number of extensions: 78484
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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