Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k09
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854...    29   4.4  
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245...    29   5.9  
04_01_0475 - 6196747-6197065,6197193-6197236,6198649-6198721,619...    29   5.9  

>03_02_0444 -
           8543426-8543635,8543945-8544151,8544293-8544400,
           8544744-8544803,8544914-8544989,8545190-8545347,
           8545479-8545541,8545653-8545737,8546423-8547438
          Length = 660

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 270 LTRELDFPNSTWNFFESAHGKGAADGVGGPIKRNLDAFVAYCM--DVPDAKTAFNLLE 103
           LTR+L +P   W       GKG    +   + R+   F++ C+  +  D  +A  LLE
Sbjct: 511 LTRQLPYPGLEWTQALYRIGKGEPPAIPNCLSRDARDFISQCVKPNPQDRPSAAKLLE 568


>07_03_1315 -
           25722757-25722876,25722972-25723328,25723924-25724500,
           25724577-25725265,25725487-25725822,25726190-25726527,
           25726619-25726746,25726906-25727030,25727547-25727589,
           25727714-25727802,25728396-25728511,25729157-25729276,
           25729752-25729794
          Length = 1026

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 261 ELDFPNSTWNFFESAHGKGAADGVGGPIKRNLDAF 157
           +LD  +S+  F+ S      ADG   PI   LDAF
Sbjct: 383 DLDIKSSSDAFWSSTETVNVADGTSIPINEQLDAF 417


>04_01_0475 -
           6196747-6197065,6197193-6197236,6198649-6198721,
           6198823-6198933,6199023-6199196,6199285-6199466
          Length = 300

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 686 LIDSFQKELKDFKIHLYNIFHQYKEYCRCTKNLDSHTVALHIDFSENYACKL 531
           +ID ++K+ +D  +HL    H ++ Y     N + H V L  D     ACK+
Sbjct: 87  MIDKYEKDTEDNLVHLLTQQH-FRTYILLPYNTEFHWVLLFFDLD---ACKV 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,259,805
Number of Sequences: 37544
Number of extensions: 440456
Number of successful extensions: 1166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)