Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k09
         (818 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.                31   6.6  
BC035913-1|AAH35913.1|  737|Homo sapiens PCNT protein protein.         31   6.6  
AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.        31   6.6  
AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.             31   6.6  
BC068992-1|AAH68992.1|  474|Homo sapiens ATG4 autophagy related ...    30   8.8  
AK223383-1|BAD97103.1|  474|Homo sapiens APG4 autophagy 4 homolo...    30   8.8  
AJ312332-1|CAC85951.1|  474|Homo sapiens APG4-D protein protein.       30   8.8  

>U52962-1|AAD10838.1| 3321|Homo sapiens kendrin protein.
          Length = 3321

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 815 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 639
           +  ++  N  ++ T +   +   D      R +  +K  S ++ L + FQKEL + +  L
Sbjct: 332 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 391

Query: 638 YNIFHQYKEYCRCTKNLDSH 579
             IF    +  R  +NL+SH
Sbjct: 392 EKIFQDKNQAERALRNLESH 411


>BC035913-1|AAH35913.1|  737|Homo sapiens PCNT protein protein.
          Length = 737

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 815 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 639
           +  ++  N  ++ T +   +   D      R +  +K  S ++ L + FQKEL + +  L
Sbjct: 319 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 378

Query: 638 YNIFHQYKEYCRCTKNLDSH 579
             IF    +  R  +NL+SH
Sbjct: 379 EKIFQDKNQAERALRNLESH 398


>AF515282-1|AAP46636.1| 3336|Homo sapiens pericentrin B protein.
          Length = 3336

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 815 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 639
           +  ++  N  ++ T +   +   D      R +  +K  S ++ L + FQKEL + +  L
Sbjct: 332 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 391

Query: 638 YNIFHQYKEYCRCTKNLDSH 579
             IF    +  R  +NL+SH
Sbjct: 392 EKIFQDKNQAERALRNLESH 411


>AB007862-1|BAA23698.3| 3284|Homo sapiens KIAA0402 protein.
          Length = 3284

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 815 INDKISLNEWVLSTHEYRSKKNNDETKTTKRVDKESKTGS-LQTLIDSFQKELKDFKIHL 639
           +  ++  N  ++ T +   +   D      R +  +K  S ++ L + FQKEL + +  L
Sbjct: 359 LQSEMEKNAQIVKTLKEDWESEKDLCLENLRKELSAKHQSEMEDLQNQFQKELAEQRAEL 418

Query: 638 YNIFHQYKEYCRCTKNLDSH 579
             IF    +  R  +NL+SH
Sbjct: 419 EKIFQDKNQAERALRNLESH 438


>BC068992-1|AAH68992.1|  474|Homo sapiens ATG4 autophagy related 4
           homolog D (S. cerevisiae) protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 464 RFQYEYLFDV*SHQNALPVFLWLTYRRNF--LKNLCVMLQCGY 586
           R+++E   D+   Q      LWLTYRR+F  L   C+   CG+
Sbjct: 100 RYRFEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGW 142


>AK223383-1|BAD97103.1|  474|Homo sapiens APG4 autophagy 4 homolog D
           variant protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 464 RFQYEYLFDV*SHQNALPVFLWLTYRRNF--LKNLCVMLQCGY 586
           R+++E   D+   Q      LWLTYRR+F  L   C+   CG+
Sbjct: 100 RYRFEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGW 142


>AJ312332-1|CAC85951.1|  474|Homo sapiens APG4-D protein protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 464 RFQYEYLFDV*SHQNALPVFLWLTYRRNF--LKNLCVMLQCGY 586
           R+++E   D+   Q      LWLTYRR+F  L   C+   CG+
Sbjct: 100 RYRFEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGW 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,815,918
Number of Sequences: 237096
Number of extensions: 2541198
Number of successful extensions: 8799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8799
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)