Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k08
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   4.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   4.4  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   4.4  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = +1

Query: 532  TEEQLVKQHVDALSRNILFVDVELHARVKKAQADDESLKVIRKILEENEYEDYFLENGVI 711
            T ++L+ Q+V+A   NI  + +E  A     +    SL ++ K+L ENE  D +    ++
Sbjct: 2438 TVDKLLTQYVNA---NIPSISMETTA----CEVVGTSLSLLNKVLVENEVGDIYSYLKIL 2490

Query: 712  YKGI-----EKKLVLPKIL 753
             KG+      K+++LP+ L
Sbjct: 2491 GKGVNELKSSKQVILPENL 2509


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 191 LPIEYTLELPNPVSNIFSGMYSHFS--FVNKSKVIKFKSLPVSI 66
           L + Y +ELPN  SN+ S + S F   F ++  V K+ S   SI
Sbjct: 136 LGLNYEIELPNSFSNLTSLLSSTFQLCFQHEFTVSKYASSEESI 179


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 514 PRRL--AITEEQLVKQHVDALSRNILFVDVELHARV 615
           P+RL  A TEE ++  H+D + R    V ++L+ RV
Sbjct: 661 PKRLDLAATEETVLIDHIDLIRRKGFGVAIDLNQRV 696


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 185 IEYTLELPNPVSNIFSGMYSHFSFVNKSKVIKFKSLPVSIKQLVT 51
           IEYT+ +P     I S +  HF  V   K +    + +++K+ +T
Sbjct: 184 IEYTISVPTKAYAIGSYIPIHFVLVPLLKRLTIGKISITLKEYIT 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,870
Number of Sequences: 5004
Number of extensions: 69358
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)