Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k08
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 32 0.66
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 31 1.2
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 31 1.5
12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743... 30 2.0
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 30 2.7
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 29 4.7
11_01_0082 - 625869-627065 29 6.2
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 29 6.2
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 31.9 bits (69), Expect = 0.66
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Frame = +1
Query: 271 DVILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSSN---------DQCTAVRE 423
DVILG +L VID +V T D LSS S ++ VRE
Sbjct: 444 DVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVYALSSESLRSRLNQITLEEIPIVRE 503
Query: 424 IIDSYT------PLKTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQLVKQHVDAL 570
D + P K +D R+ +V P+ +RP R+A E VK+HVD L
Sbjct: 504 YPDVFPDDLPGMPPK-RDIEFRIDLV-PGTTPIHKRPYRMAANELAEVKRHVDDL 556
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 31.1 bits (67), Expect = 1.2
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Frame = +1
Query: 271 DVILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSS-----NDQCTAVREIIDS 435
DVILG +L VID +V T YD LSS S N I+
Sbjct: 665 DVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESLRSRLNQITLEEIPIVRE 724
Query: 436 YTPLKTKDAP-------IRLKI-VLKDDVPVSQRPRRLAITEEQLVKQHVDAL 570
Y + D P I I ++ P+ +RP R+A E VK+ VD L
Sbjct: 725 YPDVFPDDLPGMPPKRDIEFSIDLVPGTTPIHKRPYRMAANELAEVKRQVDDL 777
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 30.7 bits (66), Expect = 1.5
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = +1
Query: 274 VILGQQFLVNTITVIDRGLVEVRPTCYDISYQNAICLSSSSNDQCTAVREIIDSYTPLKT 453
V G+ + +TI+++ RGL E + + + +S++ + R I + P K
Sbjct: 490 VYCGEPAVEDTISIL-RGLRERYELHHGVKISDGALVSAA----VLSDRYITGRFLPDKA 544
Query: 454 KDAPIRLKIVLKDDVPVSQRPRRLAITEEQLVKQHVDALSRNILFVDVELHARVKKAQAD 633
D LK + ++ +P L + ++++ ++ LS D R+ K +AD
Sbjct: 545 IDLVDEAAAKLK--MEITSKPIELDEVDREIIRLEMEKLSLKN-DTDKASKQRLSKLEAD 601
Query: 634 DESLKVIRKILEEN-EYE 684
ESLK +K L E+ EYE
Sbjct: 602 LESLKQKQKNLSEHWEYE 619
>12_01_0810 +
7429834-7429960,7430534-7430696,7430796-7430844,
7431203-7431385,7431824-7431898,7431963-7432148,
7432362-7432450,7432892-7433444
Length = 474
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 592 DVELHARVKKAQADDESLKVIRKILEE--NEYEDYFLENGVIYKGIEKKLVLPKILDMEI 765
D+EL KKA+A S V++ + EE +EY L G +Y E+K +L + +
Sbjct: 115 DIELEGLEKKAKASGASQLVVKDLKEEFVSEYIYPCLRAGAVY---ERKYLLGTSMARPV 171
Query: 766 IKKA 777
I KA
Sbjct: 172 IAKA 175
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 172 KVYSIGKFDTDLTIDSHRYSINLYIVPTGG-IPYDVILGQQFLVNTITVID-RGLVEVRP 345
KV+S+G D + T+D H +N TGG PY + T V+ ++ + P
Sbjct: 195 KVWSLGSPDPNFTLDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKTALVVPFLSIIVLDP 254
Query: 346 TCYDISYQNAICLS 387
+ + N + +S
Sbjct: 255 FNLTVDWNNTLLVS 268
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 166 SSKVYSIGKFDTDLTIDSHRYSINLYIVPTGG 261
++K++S+G D + T+D H+ +N TGG
Sbjct: 161 TTKIWSLGSPDPNFTLDGHQKGVNCVDYFTGG 192
>11_01_0082 - 625869-627065
Length = 398
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +1
Query: 121 KCEYIPEKMLLTGLGSSKVYSIGKFDTDLTIDSHRYSINLYIVPTGGIPYDVILGQQFLV 300
+ EY+PE L GL + YS+ F DL D + V + D+++ Q +L
Sbjct: 255 RAEYVPELNLWFGLSADHPYSLCAF--DLPSDDSSVAAKPPTVQHTWV--DLVIPQSWLP 310
Query: 301 NTITVIDRGLVE--VRPTCYDISYQNAICLSSSSND 402
I +I+ G + + IS C S S+D
Sbjct: 311 WNINLINLGCGRFCIAKMFHSISGDGTFCSYSESDD 346
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 103 DLFTKLKCEYIPEKMLLTGLGSSKVYSIGKFDTD 204
D + KLKCE + ++ +G G VYS+ D +
Sbjct: 688 DSYLKLKCEVVGASIVKSGSGMFAVYSVSVTDAN 721
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,522,366
Number of Sequences: 37544
Number of extensions: 384158
Number of successful extensions: 865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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