Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17k08
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 30 1.8
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 29 4.2
AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical ... 29 4.2
U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical pr... 29 5.5
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 29 5.5
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 29 5.5
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr... 28 7.3
AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical... 28 7.3
AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical... 28 7.3
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 28 7.3
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 28 7.3
Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical p... 28 9.6
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 9.6
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 9.6
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 9.6
U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane r... 28 9.6
AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin monoox... 28 9.6
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 28 9.6
AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell... 28 9.6
AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell... 28 9.6
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +1
Query: 430 DSYTPLKTKDAPIRLKIVLKDDVPVSQRPRRLAITE--------EQLVKQHVDALSRNIL 585
D P K+KD VL +D+P + + +I+E EQ V + V + S N L
Sbjct: 252 DHTRPNKSKDLRSSEDQVLTEDLPAASKTPPASISELDMGEQGAEQRVTRSVHSTSSNEL 311
Query: 586 FVDVELHARVKKAQADDESLKVIRKILEENEY 681
+E+H V K++ + +LE+ +
Sbjct: 312 SEPIEVHLLVDKSEVNRHIKSKEHPLLEDQNF 343
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 631 DDESLKVIRKILEENEYEDYFLENGVIYKGIEKKLVL-PKILDMEIIKKAHRTGHFGK 801
D++ LK + L+ ++ Y V+ K + + L P++ D EI+KK G +GK
Sbjct: 79 DEQRLKKQAEKLKLSDARQYLCNYRVLQKNLVYVVGLSPRVADPEILKKNEYFGRYGK 136
>AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical
protein Y116A8C.18 protein.
Length = 358
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 466 IRLKIVLKDDVPVSQRPRRLAITEEQLVKQHVDALSRNILFVDVELHARVKKAQADDESL 645
++L L D + + ++ + EE+L K+H+ +++ +E + K + E L
Sbjct: 71 LKLSEELIDCLEKQLQESKIELKEEKLSKKHLLTTMKSLETEKMEQEHKTKIMNKEVEEL 130
Query: 646 KVIRKILEENEYEDYFLE 699
K+ K LE +Y + +E
Sbjct: 131 KIRVKELEATDYSEKNIE 148
>U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical
protein T19D2.1 protein.
Length = 872
Score = 28.7 bits (61), Expect = 5.5
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 565 ALSRNI-LFVDVELHARVKKAQ-ADDESLKVIRKILEENEYEDY-FLENGVIYKGIEKKL 735
ALS + LFV E A A A+ ESLK +K LE E+ F EN I K + +
Sbjct: 2 ALSNQLSLFVYYEEVADGFSAMNAEIESLKHKKKNLEMTFNEELQFAEN--IGKTVSNGM 59
Query: 736 VLPKILDMEIIKKAHRTGH 792
V+ D +I+ H+TGH
Sbjct: 60 VVADNGDYHLIQSHHQTGH 78
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 517 RRLAITEEQLVKQHVDALSRNILFVDV--ELHARVKKAQADDESLKVIRKILEEN 675
+++ TEE+ + + R+ F+ V ++ A+ +K + DDE L + + ILE+N
Sbjct: 5 KKVPTTEEEKAAKQKEHTKRSQQFLHVRDKIVAKREKGEYDDEILSLTQAILEKN 59
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = -1
Query: 258 TCRYNIQINTISVTVNS*ICVELTNRIYFRAS*PSKQHFFWYVLAF*FCKQIKSY 94
T RY ++ VTVNS C++ NR + R P F Y +C Q SY
Sbjct: 71 TARYE-KVTVFGVTVNSRQCIDFDNRNFSRHVLPFNDFVFIY-----YCIQDNSY 119
>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
protein.
Length = 1651
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 691 FLENGVIYKGIEKKLVLPKILDMEIIKKAHRTGHFGKKKIR 813
+L+N +Y+ + K + P+++ ME+ + HF K +IR
Sbjct: 1104 WLQNEKVYQHVAKFEIKPEVVKMEVEAVCNNDFHFCKTQIR 1144
>AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical
protein Y113G7B.5b protein.
Length = 327
Score = 28.3 bits (60), Expect = 7.3
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Frame = +1
Query: 367 QNAICLSSSSNDQCTAVREIIDSYTPLKTK-DAPI-RLKIVLKDDVPVSQRPRRLAITEE 540
+ AIC S +SND VR S + KT+ DA + L +++K+ P + + ++
Sbjct: 82 RGAICYSRNSNDPGCTVRRTSQSKSIEKTQLDAILDDLAVIVKN--PKLRLDNFVIVSSH 139
Query: 541 QLVKQHVDALSRNILFVDVELHARVKKAQADDESLKVIRKILEENEYEDYFLENGVIYKG 720
+ KQ V+ + R+I + LH KK + D LK + +L + + FLE+ + +
Sbjct: 140 EASKQFVEWI-RDIAQSGILLH--TKKIKLDIFPLKDVFGVL--SHCKPGFLED-IEFYC 193
Query: 721 IEKKLVLPKILDMEIIKKA 777
+ + +I+++E K+A
Sbjct: 194 YDSAGKMDEIINLEQWKRA 212
>AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical
protein Y113G7B.5a protein.
Length = 312
Score = 28.3 bits (60), Expect = 7.3
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Frame = +1
Query: 367 QNAICLSSSSNDQCTAVREIIDSYTPLKTK-DAPI-RLKIVLKDDVPVSQRPRRLAITEE 540
+ AIC S +SND VR S + KT+ DA + L +++K+ P + + ++
Sbjct: 82 RGAICYSRNSNDPGCTVRRTSQSKSIEKTQLDAILDDLAVIVKN--PKLRLDNFVIVSSH 139
Query: 541 QLVKQHVDALSRNILFVDVELHARVKKAQADDESLKVIRKILEENEYEDYFLENGVIYKG 720
+ KQ V+ + R+I + LH KK + D LK + +L + + FLE+ + +
Sbjct: 140 EASKQFVEWI-RDIAQSGILLH--TKKIKLDIFPLKDVFGVL--SHCKPGFLED-IEFYC 193
Query: 721 IEKKLVLPKILDMEIIKKA 777
+ + +I+++E K+A
Sbjct: 194 YDSAGKMDEIINLEQWKRA 212
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 691 FLENGVIYKGIEKKLVLPKILDMEIIKKAHRTGHFGKKKIR 813
+L+N +Y+ + K + P+++ ME+ + HF K +IR
Sbjct: 1104 WLQNEKVYQHVAKFEIKPEVVKMEVEAVCNNDFHFCKTQIR 1144
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 691 FLENGVIYKGIEKKLVLPKILDMEIIKKAHRTGHFGKKKIR 813
+L+N +Y+ + K + P+++ ME+ + HF K +IR
Sbjct: 1104 WLQNEKVYQHVAKFEIKPEVVKMEVEAVCNNDFHFCKTQIR 1144
>Z77663-14|CAB01214.2| 568|Caenorhabditis elegans Hypothetical
protein F53F4.5 protein.
Length = 568
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 130 YIPEKMLLTGLGSSKV---YSIGKFDTDLTIDSHRYSINLYIVPTGGIPYDVILGQQF 294
Y + + L G+G+S + I K +TI + R + V GG+PYDV L ++
Sbjct: 171 YEGKDVFLLGIGNSALDIAVDIAKIAKSVTISTRRGTWIFNRVSQGGMPYDVQLFSRY 228
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 728 RSWCYLRYWIWKLL 769
RSWC LR W W LL
Sbjct: 826 RSWCVLRTWDWFLL 839
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 728 RSWCYLRYWIWKLL 769
RSWC LR W W LL
Sbjct: 826 RSWCVLRTWDWFLL 839
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 728 RSWCYLRYWIWKLL 769
RSWC LR W W LL
Sbjct: 826 RSWCVLRTWDWFLL 839
>U63557-1|AAC47301.1| 558|Caenorhabditis elegans transmembrane
receptor LIN-17 protein.
Length = 558
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 471 PDRCIFSLQRCVTVNNFPHRCTLVI 397
P+RC+F L C+ +++ P+ L I
Sbjct: 236 PERCVFYLSLCIFISSLPYLTPLFI 260
>AJ581300-1|CAE46113.1| 568|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 568
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 130 YIPEKMLLTGLGSSKV---YSIGKFDTDLTIDSHRYSINLYIVPTGGIPYDVILGQQF 294
Y + + L G+G+S + I K +TI + R + V GG+PYDV L ++
Sbjct: 171 YEGKDVFLLGIGNSALDIAVDIAKIAKSVTISTRRGTWIFNRVSQGGMPYDVQLFSRY 228
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 607 ARVKKAQADDESLKVIRKILEENEYEDYFLENGVIYKGIEKKLVLPKILDMEIIKK 774
+++K+ +ES K ++K E +YE + Y+G E K+ L KILD + IK+
Sbjct: 1227 SKLKQTVDTNESEKDVKKA--ERKYEK------IQYRGAEMKVFLSKILDKKEIKR 1274
>AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform b protein.
Length = 556
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 471 PDRCIFSLQRCVTVNNFPHRCTLVI 397
P+RC+F L C+ +++ P+ L I
Sbjct: 236 PERCVFYLSLCIFISSLPYLTPLFI 260
>AC024201-1|AAF36028.1| 558|Caenorhabditis elegans Abnormal cell
lineage protein 17,isoform a protein.
Length = 558
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 471 PDRCIFSLQRCVTVNNFPHRCTLVI 397
P+RC+F L C+ +++ P+ L I
Sbjct: 236 PERCVFYLSLCIFISSLPYLTPLFI 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,174,408
Number of Sequences: 27780
Number of extensions: 387290
Number of successful extensions: 1042
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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