Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k08
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 342 PDLNQTPVNNCDSIY*KLLT 283
           PD + T + NCDS+  K  T
Sbjct: 316 PDHHSTDIQNCDSVKIKFET 335


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 566 ASTCCLTNCSSVMASRLGLCET 501
           AS C LT  +  + S L  CE+
Sbjct: 163 ASKCALTTLTDCLRSELAQCES 184


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 131 TYQKKCCLLG*EALKYI 181
           TY++  CLL  +ALK I
Sbjct: 445 TYERDTCLLASDALKQI 461



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 309 HSY*QGFG*GQAYLL 353
           HSY  GFG G A LL
Sbjct: 663 HSYGGGFGFGSAVLL 677


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 131 TYQKKCCLLG*EALKYI 181
           TY++  CLL  +ALK I
Sbjct: 483 TYERDTCLLASDALKQI 499



 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 309 HSY*QGFG*GQAYLL 353
           HSY  GFG G A LL
Sbjct: 701 HSYGGGFGFGSAVLL 715


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 185 IEYTLELPNPVSNIFSGMYSHF 120
           +E+ LEL   +S+I    ++HF
Sbjct: 871 VEFALELKKALSSINEQSFNHF 892


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 517 RRLAITEEQLVKQHVDALSRNI 582
           RRL +TE Q VK+  D ++  I
Sbjct: 328 RRLGLTEYQAVKEMHDGIAELI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,492
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)