Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k07
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.77 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    29   1.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.4  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   2.4  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   4.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   5.5  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 464 VENTQNMSDLVFLLDFPKDCPATAAKITVSTIQNGKTSKKLWNYAINKPC 315
           V+ T+ + DLV  L  P    ++  K  +ST+  G    K+W Y I   C
Sbjct: 304 VKITEKIEDLVNCLFLPLYFASSGLKTNISTLNTG----KIWGYTIGTIC 349


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -1

Query: 224 NYIEKVKLFLGS-----KFFYGTYEFRIFSFNKNDNFFCVDTIIDIKN 96
           +++E++  F G      K F  +  F+ FSF  ND+    D I+DI N
Sbjct: 27  DFVEQLSKFEGKEGLKRKLFDSSEYFQNFSFQVNDDLLGKDVILDISN 74


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 430 FSWIFQKTALQPQPKSLSVQFKTERHQKNYGTTLSTSHVNISCWARLSWIHLT 272
           +S +     ++PQ K  S Q + +  + +  TTLST+   + CW  L++  +T
Sbjct: 718 YSQVASSFLIEPQDKPPS-QTEPDNKKVDVSTTLSTNDNLVLCWRDLNFTVVT 769


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 600 LSHHTMLCKTDIIFAPMPAYIFMPHSVGSRQHI 698
           L   TM   T +IF P  A +F+P S G+  +I
Sbjct: 38  LGEATMATATGLIFGPYVAKLFVPTSWGNTDYI 70


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 358 RHQKNYGTTLSTSHVNISCWARLSWI 281
           +H KN    L++S+  I  W R SW+
Sbjct: 611 QHSKNSAWRLNSSNAKIEQWKRNSWL 636


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 194 GSKFFYGTYEFRIFSFNKNDNFFCVDTIIDIKNSN 90
           G K  +GTY+    S  K++N  C++ I  ++  N
Sbjct: 837 GRKLLFGTYKGLYISSRKSNNGSCLEPIFKLQLPN 871


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 533 KDPFSHNMPSFSLRPRSSLVNTALASHHVMQNGHN 637
           K P S   P +   P+SSL N+++AS  V +  HN
Sbjct: 324 KPPSSATGPLYH-SPQSSLTNSSVASADVQERTHN 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,157
Number of Sequences: 5004
Number of extensions: 76913
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)