Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k07
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094...    31   1.4  
01_06_0512 + 29942429-29942929                                         31   1.4  
07_01_0405 - 3104951-3105247                                           29   3.3  
07_01_0401 - 3059707-3060003                                           29   3.3  
07_01_0397 - 3026192-3026488                                           29   3.3  
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812     29   3.3  
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    29   5.7  
01_04_0116 + 16189250-16189411,16189577-16190104                       28   7.6  
03_05_1108 - 30458827-30459411,30459523-30459615                       28   10.0 
01_03_0299 + 14776146-14776462,14778198-14778437,14779483-14779813     28   10.0 

>08_02_0797 +
           21307534-21307639,21307907-21308988,21309385-21309432,
           21309705-21310217
          Length = 582

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 445 CQTLCFSWIFQKTALQPQPKSLSVQFKTERHQKNYGTTLSTSHVNISCWARLS 287
           C     SW+  +  +QP P +        R    Y   L+ S +  SCWA +S
Sbjct: 45  CSRALVSWMVAERKMQPSPAAPPAAEHRRRALLRYVVFLAVSLLAFSCWALVS 97


>01_06_0512 + 29942429-29942929
          Length = 166

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -1

Query: 401 ATAAKITVSTIQNGKTSKKLWNYAINKPCQHFVLGPIIMDSFNLTSNCKINKGSYAIHLN 222
           A AA +TV   ++G +  ++W  A+  PC  F++G  + +S+   +      GS    L 
Sbjct: 2   AAAAPLTVGEARSGVSRAQVWACAVVVPC--FIVGAYLAESYGAAAAASSFFGSVPWRLP 59

Query: 221 YIEKVKLFLGS 189
            +    ++L +
Sbjct: 60  LLVSFAVYLST 70


>07_01_0405 - 3104951-3105247
          Length = 98

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 575 PRSSLVNTALASHHVMQN--GHNFRANAC 655
           PRS+   T++ +HH ++N   HN +AN C
Sbjct: 8   PRSTQTTTSINNHHNIRNNRSHNIQANIC 36


>07_01_0401 - 3059707-3060003
          Length = 98

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 575 PRSSLVNTALASHHVMQN--GHNFRANAC 655
           PRS+   T++ +HH ++N   HN +AN C
Sbjct: 8   PRSTQTTTSINNHHNIRNNRSHNIQANIC 36


>07_01_0397 - 3026192-3026488
          Length = 98

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 575 PRSSLVNTALASHHVMQN--GHNFRANAC 655
           PRS+   T++ +HH ++N   HN +AN C
Sbjct: 8   PRSTQTTTSINNHHNIRNNRSHNIQANIC 36


>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
          Length = 492

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 533 KDPFSHNMPSFSLRPRSSLVNTALASHH 616
           +D FSH +PSFS  P   + N A   H+
Sbjct: 216 QDMFSHGVPSFSSSPTDMIANLASNDHN 243


>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
            13166756-13170655
          Length = 1415

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 20   LCSVVYIYF*FNKLGTWQRCL 82
            +C ++ +YF   KLG WQR L
Sbjct: 1358 ICKLLRLYFRITKLGAWQRSL 1378


>01_04_0116 + 16189250-16189411,16189577-16190104
          Length = 229

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 545 SHNMPSFSLRPRSSLVNTALASHH 616
           SH +PSFS  P   +  TAL  HH
Sbjct: 20  SHRLPSFSPPPLPPVSGTALCRHH 43


>03_05_1108 - 30458827-30459411,30459523-30459615
          Length = 225

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 565 LTPPTLLAR*YSSRITPCYAKRT*FSRQCLHISSCHILWGPGSIS 699
           L+PP L     ++ ITPC  +R   S   L + S H  +GPG ++
Sbjct: 56  LSPPRLRTSASTATITPCRLRRLRVSAGRLLLRSAHD-FGPGGVA 99


>01_03_0299 + 14776146-14776462,14778198-14778437,14779483-14779813
          Length = 295

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 576 GRSENEGMLCENGSLHIKLAKV*NMQGPKTDR 481
           G +   G+L E G+ H++ AKV ++ GP  +R
Sbjct: 231 GAAAQFGLLGERGNAHVRWAKVCDVYGPFCER 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,117,064
Number of Sequences: 37544
Number of extensions: 481786
Number of successful extensions: 1022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)