Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k07
         (803 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058400-1|AAL13629.1|  385|Drosophila melanogaster GH16763p pro...    29   5.6  
AE014296-892|AAN11614.1|  385|Drosophila melanogaster CG32236-PA...    29   5.6  
X98094-3|CAA66722.1|  542|Drosophila melanogaster lethal(2)relat...    29   7.4  
X95241-3|CAA64530.1|  542|Drosophila melanogaster l(2)rot protein.     29   7.4  
X77821-1|CAA54836.1|  542|Drosophila melanogaster Rot(57) protein.     29   7.4  
AE014297-4148|AAF56725.2| 1497|Drosophila melanogaster CG5586-PB...    29   9.8  

>AY058400-1|AAL13629.1|  385|Drosophila melanogaster GH16763p
           protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -3

Query: 429 SLGFSKRLPCNRSQNHCQYNSKRKDIKKIMELRYQQAMSTFRAGPDYHGFI*PYK*LQNQ 250
           SLGF  RL  NRSQ   ++N K++  +K MEL   +   T R       F   +  LQ+ 
Sbjct: 97  SLGFHARL-LNRSQLAGEFNQKQEIFRKNMEL-LGRINKTNRLKGGVDSFNRHFPALQSN 154

Query: 249 QGKLRD 232
           + K+R+
Sbjct: 155 RNKIRE 160


>AE014296-892|AAN11614.1|  385|Drosophila melanogaster CG32236-PA
           protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -3

Query: 429 SLGFSKRLPCNRSQNHCQYNSKRKDIKKIMELRYQQAMSTFRAGPDYHGFI*PYK*LQNQ 250
           SLGF  RL  NRSQ   ++N K++  +K MEL   +   T R       F   +  LQ+ 
Sbjct: 97  SLGFHARL-LNRSQLAGEFNQKQEIFRKNMEL-LGRINKTNRLKGGVDSFNRHFPALQSN 154

Query: 249 QGKLRD 232
           + K+R+
Sbjct: 155 RNKIRE 160


>X98094-3|CAA66722.1|  542|Drosophila melanogaster lethal(2)relative
           of tid protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 575 PRSSLVNTALASHHVMQNGHNFRANACIYLHATFCGVQAA 694
           PR+  V  A  +HH    GH F A A   L AT+ G + A
Sbjct: 293 PRALAV-AASGAHHEGPGGHRFEAGAVAVLTATWLGARLA 331


>X95241-3|CAA64530.1|  542|Drosophila melanogaster l(2)rot protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 575 PRSSLVNTALASHHVMQNGHNFRANACIYLHATFCGVQAA 694
           PR+  V  A  +HH    GH F A A   L AT+ G + A
Sbjct: 293 PRALAV-AASGAHHEGPGGHRFEAGAVAVLTATWLGARLA 331


>X77821-1|CAA54836.1|  542|Drosophila melanogaster Rot(57) protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 575 PRSSLVNTALASHHVMQNGHNFRANACIYLHATFCGVQAA 694
           PR+  V  A  +HH    GH F A A   L AT+ G + A
Sbjct: 293 PRALAV-AASGAHHEGPGGHRFEAGAVAVLTATWLGARLA 331


>AE014297-4148|AAF56725.2| 1497|Drosophila melanogaster CG5586-PB
           protein.
          Length = 1497

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 VILAAVAGQSFGKSKRNTRSDIFCVFSTPNLPQSVCFG 495
           V++ +VAGQ +  S  N  S I C   TP+  Q V FG
Sbjct: 217 VLVGSVAGQRYWSSMLNLESTITCGIWTPD-DQQVYFG 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,848,268
Number of Sequences: 53049
Number of extensions: 853451
Number of successful extensions: 1739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)