Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17k03
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   2.4  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   4.2  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   7.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.4  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   9.7  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   9.7  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 9   EALAVASKRTELVDSFHFLAVWWFIHILGFD*KMHDFTHTLGVVIVKMCQSLD 167
           E LA + +  EL D  H   + +F+H+LG D   H+  H   V  V+  Q +D
Sbjct: 190 ELLAQSLEDKELWDMLHRDKIVFFLHLLGIDTIGHN-KHPDSVEYVENIQYID 241


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 151 IFTITTPSVWVKSCIF*SNPKMCINHQTAKK 59
           I+ + +PS+     I+ +NP +C+ +  AKK
Sbjct: 210 IYFLHSPSIIALGAIYHTNPTICLQYIEAKK 240


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 242 YRKRFILNCYIANVVSCTKCENR 174
           Y K F+L+CY  ++    +C  R
Sbjct: 17  YSKTFLLSCYCVSIYRLEECSGR 39


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 83  YKPPNCQKMKTVDKLCPFAGNCKGLNP 3
           + PP+ ++ K     C F  NC   NP
Sbjct: 217 HSPPSLERSKFSRAFCDFVSNCLKKNP 243


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 560  KATYLIDPDDFIDKLTLTPYTVFYNGGVLVKISGLRLYMLLTA 432
            KA   IDPD+F   +  T    F+     +K+  ++LY +  A
Sbjct: 2124 KANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEA 2166


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 43  LSTVFIFWQFGGLYTSWDLIKRCMTSPTHLES*L*KCVRALIKH 174
           LS V +F +F  + +  DL ++ + SP++++  +    + ++KH
Sbjct: 85  LSCVSVFHKFVVIASERDLARKILNSPSYVQPCVVDAGKKILKH 128


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 290 KILGDLKKNNVPRGGMYRKRFILNCYIAN 204
           ++L  LK NN+P    Y +  ++N  +AN
Sbjct: 273 ELLVYLKNNNIPINDAYLRMMVINFCLAN 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,203
Number of Sequences: 5004
Number of extensions: 61790
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)