Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j20
         (171 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   1.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         22   9.4  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    22   9.4  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    22   9.4  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 95  INSMAHPNTTHEKNID 48
           +NS A+ N  H KNID
Sbjct: 239 VNSFANDNLAHNKNID 254


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 8   IISKLATSLFTYLDQCFFH 64
           I+  +  + F YL +C++H
Sbjct: 62  ILHNICLASFLYLSKCYYH 80


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 100 HLLTPWLILTQHMKKTL 50
           HL   W I+T+HM + L
Sbjct: 256 HLPESWSIITEHMAQEL 272


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 18  NLQLHYLHT*INVFFMCCVRMSHGVNKCLNNNKILTILWDKLS 146
           NLQ +Y +  + ++ +C          CL+   + T+ WDK S
Sbjct: 57  NLQSNYKYDQVPMYSICVF--------CLSGQLLQTLTWDKTS 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,698
Number of Sequences: 5004
Number of extensions: 8575
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)