Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17j20
(171 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 20 3.2
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 20 3.2
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 20 3.2
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 20 3.2
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 19 7.3
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 19 7.3
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 19 7.3
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 19 7.3
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 19 7.3
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 19 7.3
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 18 9.7
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 18 9.7
DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein. 18 9.7
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 19.8 bits (39), Expect = 3.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Frame = +3
Query: 57 FFMCCVRMSHGVNKCLNNNKILTILWDK 140
FF C + ++ N + I WDK
Sbjct: 312 FFYCAATKNPNFDRMQGNPICVQIPWDK 339
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 108 NNKILTILWDKLSALY 155
NN+IL ILW ++
Sbjct: 97 NNQILHILWTSYKKVF 112
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 108 NNKILTILWDKLSALY 155
NN+IL ILW ++
Sbjct: 80 NNQILHILWTSYKKVF 95
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +3
Query: 54 VFFMCCVRMSHGVNKCLNNN 113
V + CV + +CL NN
Sbjct: 147 VIYTACVGLLERAFRCLGNN 166
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 18.6 bits (36), Expect = 7.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 110 II*ALINSMAHPNTTHEK 57
II +L+N+ H N ++K
Sbjct: 303 IISSLLNNTIHNNNNYKK 320
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 18.6 bits (36), Expect = 7.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 110 II*ALINSMAHPNTTHEK 57
II +L+N+ H N ++K
Sbjct: 314 IISSLLNNTIHNNNNYKK 331
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 18.6 bits (36), Expect = 7.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 110 II*ALINSMAHPNTTHEK 57
II +L+N+ H N ++K
Sbjct: 314 IISSLLNNTIHNNNNYKK 331
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 18.6 bits (36), Expect = 7.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -2
Query: 110 II*ALINSMAHPNTTHEK 57
II +L+N+ H N ++K
Sbjct: 303 IISSLLNNTIHNNNNYKK 320
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 18.6 bits (36), Expect = 7.3
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = +1
Query: 28 FTIYILRSMFFSCV 69
FT+Y++R+ +C+
Sbjct: 26 FTMYLVRAFCRNCI 39
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 18.6 bits (36), Expect = 7.3
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = +1
Query: 28 FTIYILRSMFFSCV 69
FT+Y++R+ +C+
Sbjct: 474 FTMYLVRAFCRNCI 487
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 18.2 bits (35), Expect = 9.7
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +2
Query: 32 LFTYLDQC 55
L+TY D+C
Sbjct: 461 LYTYFDKC 468
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 18.2 bits (35), Expect = 9.7
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +2
Query: 32 LFTYLDQC 55
L+TY D+C
Sbjct: 461 LYTYFDKC 468
>DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein.
Length = 160
Score = 18.2 bits (35), Expect = 9.7
Identities = 7/29 (24%), Positives = 12/29 (41%)
Frame = +3
Query: 69 CVRMSHGVNKCLNNNKILTILWDKLSALY 155
C+ + +KC N + LS +Y
Sbjct: 118 CINANKSTDKCENGLNFIICFSKLLSDMY 146
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,328
Number of Sequences: 438
Number of extensions: 570
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used: 2611500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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