Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j18
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   0.54 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   0.54 
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    26   0.95 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   0.95 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   1.3  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   1.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   2.2  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    24   2.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    23   5.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   6.7  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    23   6.7  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    23   8.8  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 211 SSLQHSAAAIYSASVLESATTDCFLELHAIGPPFI 107
           SSL  + A I+S S    A +  F+ LH +G P +
Sbjct: 791 SSLDWNFAFIHSKSAENQAISAIFMFLHTVGAPIL 825


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 147 SVVALSSTEAEYIAAAECCKELLYIRDLVKEITNENL 257
           SV+       +YI + + C E   IRDL++ ++N  L
Sbjct: 689 SVIPCQLLVGDYILSPKICVERKSIRDLIQSLSNGRL 725


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 171 EAEYIAAAECCKELLYIRDLVKEITNENLD 260
           EA+Y+A  E  K+L+  RD +K I NE +D
Sbjct: 161 EAKYLANPEKYKKLILARD-IKGIENEIVD 189


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+ AI S+SVL S+T
Sbjct: 3212 TSTPITSSSVLNSSTAITSSSVLNSST 3238



 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 2420 TSTSITSSSVLNSSTPITSSSVLNSST 2446



 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 232 TRSLIYSSSLQHSAAAIYSASVLESAT 152
           T + I SSS+ +S+  I S+SVL S+T
Sbjct: 452 TSTPITSSSVLNSSTPITSSSVLNSST 478



 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 232 TRSLIYSSSLQHSAAAIYSASVLESAT 152
           T + I SSS+ +S+  I S+SVL S+T
Sbjct: 632 TSTPITSSSVLNSSTPITSSSVLNSST 658



 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 1532 TSTPITSSSVLNSSTPITSSSVLNSST 1558



 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 1916 TSTPITSSSVLNSSTPITSSSVLNSST 1942



 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+  I S+SVL S+T
Sbjct: 2108 TSTPITSSSVLNSSTPITSSSVLNSST 2134



 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 220 IYSSSLQHSAAAIYSASVLESAT 152
           I SSS+ +S+  I S+SVL S+T
Sbjct: 756 ITSSSILNSSTPITSSSVLNSST 778



 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 220  IYSSSLQHSAAAIYSASVLESAT 152
            I SSS+ +S+  I S+SVL S+T
Sbjct: 1236 ITSSSILNSSTPITSSSVLNSST 1258



 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 220  IYSSSLQHSAAAIYSASVLESAT 152
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3096 ITSSSIVNSSTPITSSSVLNSST 3118



 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 220  IYSSSLQHSAAAIYSASVLESAT 152
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3180 ITSSSIVNSSTPITSSSVLNSST 3202



 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 220  IYSSSLQHSAAAIYSASVLESAT 152
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3456 IASSSILNSSTPITSSSVLNSST 3478



 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 220  IYSSSLQHSAAAIYSASVLESAT 152
            I SSS+ +S+  I S+SVL S+T
Sbjct: 3228 ITSSSVLNSSTPITSSSVLNSST 3250



 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 220  IYSSSLQHSAAAIYSASVLESAT 152
            I SSS+ +S+  + S+SVL S+T
Sbjct: 3348 ITSSSILNSSTPVTSSSVLNSST 3370



 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+  I S+SVL ++T
Sbjct: 980  TSTPITSSSVLNSSTPITSSSVLNTST 1006



 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 232  TRSLIYSSSLQHSAAAIYSASVLESAT 152
            T + I SSS+ +S+  I S+SVL ++T
Sbjct: 1976 TSTPITSSSVLNSSTPITSSSVLNTST 2002


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 247 FVISFTRSLIYSSSLQHSAAAIYSASVLESATTDCFLELHAI 122
           +V +F    IY+S    SAA + +A V +  T D  +E  A+
Sbjct: 488 YVCNFLPRAIYTSGKASSAAGLTAAVVKDEETGDFTIEAGAL 529


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 FLSSMQLVHHSSRSQNQKYFVSCQDHQRNQNH 46
           +L + Q  HHS +S +     S + H++  NH
Sbjct: 87  YLETFQSKHHSPQSFSASVITSMEIHEQLANH 118


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 184 IYSASVLESATTDCFLELHAIGPPFIQITKPEVLRLVSGSPAKSESQK 41
           I S SV+ SA TD         PPF+  TKP V +      A SE+ K
Sbjct: 658 ISSRSVI-SAATDSKPSTRT-SPPFVNNTKPIVAKSPVTVTASSETNK 703


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 245 RNFFYQVSNI*QFLTAFCSSNI 180
           R    QV N+ + LTAFCS +I
Sbjct: 98  RELAQQVYNVLEKLTAFCSKHI 119


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 96   NQKYFVSCQDHQRNQNHKNLSIYCHL 19
            NQK+ +SC D  +N  H+ +    H+
Sbjct: 1362 NQKFCLSCVDMLKNLEHELIKHLKHM 1387


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 259 SKFSFVISFTRSLIYSSSLQHSAAAIYSASVLESAT 152
           S  S V S + S + SSSL HS++   S+S   S++
Sbjct: 126 SSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSS 161


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 111 NGGPIAWSSRKQSVVALSSTEAEYIAAAECCKELLYIRDLVKEITNE 251
           N GP    S   SV+   ST +        C++ L + D+VK + +E
Sbjct: 297 NSGP----SNSFSVIQEQSTGSSNAKFERVCRKSLLVGDIVKVLADE 339


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -2

Query: 117 HHSSRSQNQ---KYFVSCQDHQRNQNHKNLSIYCHL 19
           HHS+  + +   KY  S QD +RN     L +   +
Sbjct: 410 HHSTSEKLEELSKYVASIQDKERNNGQNALELQARI 445


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 214 SSSLQHSAAAIYSASVLESATTDCFLELHA 125
           SSS+ H+    + ++   +    CFLE HA
Sbjct: 296 SSSIIHNPHPTHPSASAMNYMNPCFLEFHA 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,080,203
Number of Sequences: 5004
Number of extensions: 18433
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)