Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17j18
(262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0631 - 18190195-18190686,18190866-18191066 68 9e-13
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 64 1e-11
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 63 3e-11
04_01_0630 - 8354628-8355803,8355837-8355926 60 2e-10
09_02_0336 - 7397745-7398308,7398813-7400723 40 4e-04
07_03_0346 - 17010472-17010843 36 0.006
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 27 1.6
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873... 27 1.6
11_01_0425 - 3268975-3269409 26 3.6
03_02_0700 - 10517754-10519100 26 3.6
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 26 4.8
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 25 6.3
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 25 8.4
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 25 8.4
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 25 8.4
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 68.1 bits (159), Expect = 9e-13
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = +3
Query: 33 LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIAAAECCKEL 212
L G+ DSD+AG R+ST+G ++ ++WS +KQ+ +ALS+ EAEY+AA CC +L
Sbjct: 73 LLGYSDSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGSCCAQL 132
Query: 213 LYIRDLVK 236
L+++ +K
Sbjct: 133 LWMKQTLK 140
>02_05_0338 - 28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 64.1 bits (149), Expect = 1e-11
Identities = 28/80 (35%), Positives = 49/80 (61%)
Frame = +3
Query: 3 GIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEY 182
G+HY+ +L G+ DS++ D D ++TSG+V + GG ++W S KQ+++ S+ EAE
Sbjct: 861 GLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAEL 920
Query: 183 IAAAECCKELLYIRDLVKEI 242
A E ++RDL+ ++
Sbjct: 921 TALDTATVEAEWLRDLLMDL 940
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 63.3 bits (147), Expect = 3e-11
Identities = 27/80 (33%), Positives = 48/80 (60%)
Frame = +3
Query: 3 GIHYSKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEY 182
GIHY+ +L G+ DS++ D D ++TSG+ + GG ++W S KQ+++ S+ EAE
Sbjct: 817 GIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGGGAVSWKSCKQTILTRSTMEAEL 876
Query: 183 IAAAECCKELLYIRDLVKEI 242
A E ++R+L+ ++
Sbjct: 877 TALDTATVEAEWLRELLMDL 896
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 60.1 bits (139), Expect = 2e-10
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +3
Query: 3 GIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAE 179
G+ + K + L G+ D+ + DP RS +GFV G I+W S KQ++VA S+ +E
Sbjct: 236 GLFFKKNQGSTLIGYTDAGYLSDPHNARSQTGFVFLQGGTAISWKSSKQTLVATSTNHSE 295
Query: 180 YIAAAECCKELLYIRDLVKEI 242
IA E +E +++R +V I
Sbjct: 296 IIALYEASRECVWLRRMVNHI 316
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 6 IHYSKGDNI-LRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRK 143
+ Y + +++ + G+ DSDFA D +STSG+V + GG I+W S K
Sbjct: 780 LSYRRSESLQIVGYSDSDFA--KDNTKSTSGYVFTLAGGAISWKSSK 824
>07_03_0346 - 17010472-17010843
Length = 123
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 3 GIHYSKGD-NILRGFCDSDFAGDPDTRRSTSGF 98
G+H G L + D+D+AG PD+RRSTSG+
Sbjct: 84 GLHIGTGPVKSLTAYSDADWAGCPDSRRSTSGY 116
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 12 YSKGDNILRGFCDSDFAGDPDTRRSTSGFVIW 107
+ + D L G+ DSDFA + D RRS + V++
Sbjct: 375 FGRTDKGLVGYVDSDFAANLDKRRSFTVKVLY 406
>01_06_0227 -
27686525-27686607,27686731-27686803,27687027-27687315,
27687755-27687832,27687869-27687992,27688796-27688940,
27689046-27689166,27689386-27689542,27690704-27690840,
27691863-27692122,27692199-27692387,27692572-27692775,
27693390-27693436,27694435-27694462
Length = 644
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 48 DSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEAEYIA 188
D + A D TSG V+ N GP + Q ++L S+ EY A
Sbjct: 371 DQNNASDCPNNDDTSGGVVATNNGPRNRNGSTQKAMSLPSSPHEYRA 417
>11_01_0425 - 3268975-3269409
Length = 144
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 27 NILRGFCDSDFAGDPDTRRSTS 92
+ILRGFCD++ A P + S
Sbjct: 112 DILRGFCDAELAAPPPPSTNAS 133
>03_02_0700 - 10517754-10519100
Length = 448
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 130 HAIGPPFIQITKPEVLRLVSGSPAKSES 47
H PPF+ KP VL + SP E+
Sbjct: 127 HPETPPFVNDVKPRVLLVTGSSPKPCEN 154
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 162 SSTEAEYIAAAECCKELLYIRDLVKEI 242
+S+E I + CC +LY+ L++E+
Sbjct: 2051 TSSEENIILSQPCCDNVLYLLKLIQEL 2077
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 15 SKGDNILRGFCDSDFAGDPDTRRSTSGFVIWMNGGPIAWSSRKQSVVALSSTEA 176
S+G++ R + D D G P RR G GG + S VA S TEA
Sbjct: 179 SRGNSDSRSYDDEDDDGPPGYRRERRG------GGRFDDAGSSMSGVAASKTEA 226
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 124 LHGAQENNQLWHFRALKLSILLLQNAVRNCYILETW*KKLRMKIWI 261
LHGA E++ L+ R L+ L ++A++ +W L + W+
Sbjct: 122 LHGAFEDDLLFVLRVLRCPFKLTRSALKAPGTPHSWPPLLSVLYWL 167
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -2
Query: 180 TQLQCSKVPQLIVFLSS-----MQLVHHSSRSQNQKYFVSC 73
T++Q K L + L+ + LV RS++Q YF+SC
Sbjct: 1260 TKIQADKATHLSLALAENAIVLLMLVEDHLRSRSQHYFLSC 1300
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 111 SSRSQNQKYFVSCQDHQRNQNHKNLSIYCH 22
S+R++ K+F C D Q+H + Y H
Sbjct: 479 SNRAKCAKFFKKCLDFLSEQDHLVVRAYAH 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,797,572
Number of Sequences: 37544
Number of extensions: 122908
Number of successful extensions: 355
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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