Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j18
         (262 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.12 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   1.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   1.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   1.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   1.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   1.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   2.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   4.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   4.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.12
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -2

Query: 180 TQLQCSKVPQLIVFLSSMQLVHH----SSRSQNQK---YFVSCQDHQ 61
           TQLQ S + Q  ++L   Q  HH    S  + NQ+   YF S +DHQ
Sbjct: 86  TQLQ-SFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQ 131


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 39  LSIYCHLYC 13
           L IYC LYC
Sbjct: 209 LGIYCRLYC 217


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +3

Query: 6   IHYSKGDNILRGFCDSDFAGDPD-TRRSTSGFVIWMNGG--PIAWSSRKQSVV--ALSST 170
           I Y+  DN  +    S FA DP  T  + +G    +  G   +A S   Q++   ALSS 
Sbjct: 212 IIYNNSDNSFQRLTSSTFASDPRYTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSH 271

Query: 171 EAEYIAAAECCK 206
              Y+   +  K
Sbjct: 272 NLNYVNTEQFVK 283


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 105 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 4
           +S+  K  +S   +  N N+ N   Y  LYCN Y
Sbjct: 75  KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 105 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 4
           +S+  K  +S   +  N N+ N   Y  LYCN Y
Sbjct: 75  KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 105 RSQNQKYFVSCQDHQRNQNHKNLSIYCHLYCNEY 4
           +S+  K  +S   +  N N+ N   Y  LYCN Y
Sbjct: 75  KSKEHK-IISSLSNNYNYNNNN---YKKLYCNNY 104


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -1

Query: 205 LQHSAAAIYSASVLESATTDCFLELHAIGPPFIQITKPEVLR 80
           L   + A +   + E    +  + L+A   PF+ +  PE+++
Sbjct: 51  LVKKSTAHFVKDIYEKYKNEPMVGLYATRSPFLLLNDPELIK 92


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 148 DCFLELHAIGPPFIQI 101
           +C+ E   +GP F QI
Sbjct: 112 NCYYETWVLGPLFCQI 127


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 148 DCFLELHAIGPPFIQI 101
           +C+ E   +GP F QI
Sbjct: 78  NCYYETWVLGPLFCQI 93


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 175 LSILLLQNAVRNCYI 219
           ++++LLQN +  C+I
Sbjct: 80  INLILLQNIIDICWI 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,023
Number of Sequences: 438
Number of extensions: 1450
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)