Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17j12
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 136 3e-33
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 86 5e-18
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 77 4e-15
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 75 1e-14
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 58 2e-09
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 50 3e-07
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 50 6e-07
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 49 8e-07
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 48 2e-06
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 48 2e-06
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 46 9e-06
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 45 1e-05
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 43 5e-05
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 41 2e-04
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 38 0.002
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 37 0.004
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 36 0.010
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 34 0.030
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 3.5
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 8.0
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 136 bits (330), Expect = 3e-33
Identities = 64/96 (66%), Positives = 76/96 (79%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LDRKIEIPLPNE R+EILKIH ++K GE+DYEA+VKL+D NGADLRNV TEAG
Sbjct: 291 PGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAG 350
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 551
AI+ +R+Y+IQ DLM A RKVAD KKLE +DY+
Sbjct: 351 FIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQ 386
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 86.2 bits (204), Expect = 5e-18
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRK+E LP+ + R IL+IHA +A ++ +E + +L + GA+LR+VCTEAG
Sbjct: 338 PGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAG 397
Query: 658 LFAIRAEREYIIQEDLMKAVRKVA-DNKKLESKLDY 554
+FAIRA R ++D + AV+KV N+K S DY
Sbjct: 398 MFAIRARRRVATEKDFLDAVQKVVKGNQKFSSTADY 433
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 76.6 bits (180), Expect = 4e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKIE P P+ +AR EIL+IH+ + +D +++ + + +GA+L+ VCTEAG
Sbjct: 305 PGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAG 364
Query: 658 LFAIRAEREYIIQEDLMKAVRKV 590
+FA+R R ++ QED AV KV
Sbjct: 365 MFALRERRVHVTQEDFELAVAKV 387
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/84 (41%), Positives = 55/84 (65%)
Frame = -3
Query: 829 LDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFA 650
LDRK+E PLPNE+AR+ IL+IH+ +A ++++E + + +D +NGA L++VC EAG+ A
Sbjct: 347 LDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIA 406
Query: 649 IRAEREYIIQEDLMKAVRKVADNK 578
+R I E M + +V K
Sbjct: 407 LRQGDTKINHEHFMDGILEVQMRK 430
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/87 (31%), Positives = 49/87 (56%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKI P+E + +I IH S + +++ E +++ D +GA+++ + +EAG
Sbjct: 351 PGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAG 410
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNK 578
L A+R R ++ +D +A KV K
Sbjct: 411 LLALRERRMRVVMDDFRQAREKVLKTK 437
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
DR++++ +P+ RLEIL+IH + ++D E + + + G+DL ++C+EA + I
Sbjct: 384 DREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQI 443
Query: 646 RAEREYI-IQEDLMKA 602
R + + I + ED + A
Sbjct: 444 REKMDMIDLDEDEIDA 459
Score = 47.2 bits (107), Expect = 3e-06
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEIL--KIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTE 665
P LD+ I +PLP+E+AR IL ++ +P+A+ ++D AV K + F+GADL V
Sbjct: 655 PGRLDQLIYVPLPDEEARFSILQTQLRHTPVAE--DVDLRAVAKATHGFSGADLEFVVQR 712
Query: 664 AGLFAIRAEREYIIQED 614
A AI+ E I+ +
Sbjct: 713 AVKLAIKDSIEEDIKRE 729
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 49.6 bits (113), Expect = 6e-07
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHG----EMDYEAVVKLSDTFNGADLRNVC 671
P L+ +EI LP+E RL+ILKIH S +A +G ++D E + L+ F+GA++ +
Sbjct: 437 PGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLI 496
Query: 670 TEAGLFA 650
A FA
Sbjct: 497 KSASSFA 503
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 49.2 bits (112), Expect = 8e-07
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKI---HASPIAKHGEMDYEAVVKLSDTFNGADLRNVCT 668
P DR+ PLPN+QAR++IL+I H SP K E + + + + GADL+ +CT
Sbjct: 533 PGRFDREFYFPLPNKQARMKILEINSLHFSP--KIPESYLLHLAESTSGYGGADLKALCT 590
Query: 667 EAGLFAIR 644
EA L A+R
Sbjct: 591 EAALNAVR 598
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 47.6 bits (108), Expect = 2e-06
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNE--QARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTE 665
P LDRKIE P + Q RL I A + E+D + + D +GA + + +
Sbjct: 293 PGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSP-EVDLDTFIMRPDASSGAQIAAIMQD 351
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 551
AGL A+R R I+Q D+ +A + +E YK
Sbjct: 352 AGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFAFYK 389
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEA--VVKLSDTFNGADLRNVCTE 665
P DR+I I P+ R +I K+H I +D A + L+ F GAD+ NVC E
Sbjct: 455 PGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNE 514
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 560
L A R+ + +A+ +V + +S++
Sbjct: 515 GALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRV 549
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 45.6 bits (103), Expect = 9e-06
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P DR I +PLP+ + RL IL H + ++D + + + F GADL N+ +A
Sbjct: 426 PGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAA 485
Query: 658 LFAIRAEREYIIQEDL 611
++A + + DL
Sbjct: 486 VYASKNLSTAVSMRDL 501
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LDR + + PN +AR +I+KI A + ++D + + + ++ +GA++ +C EAG
Sbjct: 702 PGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAG 761
Query: 658 LFAIRAERE 632
L A+ + E
Sbjct: 762 LIAMHEDLE 770
Score = 42.3 bits (95), Expect = 9e-05
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKH-GEMDYEAVVKLSDTFNGADLRNVCTEA 662
P L+++IEI +P++ ARL+I+K+ S + + E + + + GADL V EA
Sbjct: 435 PGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREA 494
Query: 661 GLFAIRAEREYIIQED 614
L AI+ R +Q+D
Sbjct: 495 ALRAIK--RTISLQKD 508
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
DR+I + +P++ AR +IL+ A + G+ D+ + K + + GADL+ + AG+ AI
Sbjct: 338 DREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAI 397
Query: 646 R 644
+
Sbjct: 398 K 398
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVK--LSDTFNGADLRNVCTE 665
P LD+ + + LP+ R+EILK H E++ + + + F+GADL + E
Sbjct: 648 PGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVRE 707
Query: 664 AGLFAIRA 641
A + A+R+
Sbjct: 708 AAVTALRS 715
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHA-SPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEA 662
P DR+ PLP+ AR +I++IH + E + + S + GADLR +CTEA
Sbjct: 427 PGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEA 486
Query: 661 GLFAIR 644
L +I+
Sbjct: 487 ALNSIK 492
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPI-AKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFA 650
+++I IPLPN AR + +++ I ++ D++ + K++D ++G+D+ V +A +
Sbjct: 287 EKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEP 346
Query: 649 IR 644
+R
Sbjct: 347 VR 348
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 829 LDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEA 662
+ + IPLPN + R +IL+++ + D+ VV + +G+ ++ VC A
Sbjct: 249 MPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSA 304
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LD+ I LPNE+ RLE+L+ A+ + + L+D + ADL ++ +A
Sbjct: 762 PGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAH 821
Query: 658 LFAI 647
L A+
Sbjct: 822 LIAV 825
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 33.9 bits (74), Expect = 0.030
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Frame = -3
Query: 823 RKIEIPLPNEQARLEILKIHASPIAKHGEM-----DYEAVVKLSDTFNGADLRNVCTEAG 659
R+ IPLP+E R ++H + + K+ + D EA+VK ++ ++G+DL + +A
Sbjct: 628 RRTYIPLPDETTR----RLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAA 683
Query: 658 LFAIRAEREYIIQEDLMKAVRKV 590
+ +R+ E ++ M+++R +
Sbjct: 684 MGPLRSLGESLLFTK-MESIRPI 705
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 52 KKINTNDQHFRASNFKCSLK 111
KK+N +HF+ ++F C LK
Sbjct: 41 KKVNFEIEHFKGADFDCQLK 60
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.8 bits (54), Expect = 8.0
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 183 NIFQHMFDNLRRVIEIFHNLGRSHSILLTLQLK*I--SQVLGT*ML*VLLSVNRFCINVY 356
+I + +F++L VI+ LG+ S L LQ+ I + + L +L+S+ R C N++
Sbjct: 92 DILESLFNSLNAVIQ----LGQD-SQLRVLQIIPIICTHYAASMKLPILISLFRICFNLH 146
Query: 357 NSRSHCCLNLTRINL 401
NS++ N L
Sbjct: 147 NSKNSVVSNAAAATL 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,478
Number of Sequences: 5004
Number of extensions: 57448
Number of successful extensions: 152
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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