Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17j12
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 161 4e-40
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 161 4e-40
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 81 1e-15
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 81 1e-15
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 76 3e-14
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 75 7e-14
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 74 2e-13
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 74 2e-13
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 74 2e-13
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 62 7e-10
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 55 6e-08
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 55 6e-08
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 49 5e-06
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 44 1e-04
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 44 1e-04
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 43 3e-04
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 43 3e-04
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 43 3e-04
AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical ... 42 4e-04
AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 39 0.004
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 39 0.004
Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical pr... 37 0.016
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 37 0.016
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 37 0.016
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 37 0.022
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 35 0.066
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 31 1.4
U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z79605-2|CAB01903.1| 342|Caenorhabditis elegans Hypothetical pr... 30 2.5
U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory recep... 29 5.7
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 29 5.7
AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative chem... 29 5.7
Z49967-10|CAA90254.1| 553|Caenorhabditis elegans Hypothetical p... 28 7.5
Z50029-7|CAA90343.3| 447|Caenorhabditis elegans Hypothetical pr... 28 10.0
AF387606-1|AAK70489.1| 447|Caenorhabditis elegans putative chem... 28 10.0
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 161 bits (392), Expect = 4e-40
Identities = 76/98 (77%), Positives = 87/98 (88%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LDRKIEI LPNEQ+RLEILKIH++ I KHGE+D+EAVVKLSD F+ ADLRNVCTEAG
Sbjct: 301 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 360
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYKPV 545
+FAIRAERE++I ED MKAVRKV D K+LE+KLDYKPV
Sbjct: 361 MFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDYKPV 398
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 161 bits (392), Expect = 4e-40
Identities = 76/98 (77%), Positives = 87/98 (88%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LDRKIEI LPNEQ+RLEILKIH++ I KHGE+D+EAVVKLSD F+ ADLRNVCTEAG
Sbjct: 309 PGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAG 368
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYKPV 545
+FAIRAERE++I ED MKAVRKV D K+LE+KLDYKPV
Sbjct: 369 MFAIRAEREFVIDEDFMKAVRKVGDAKRLETKLDYKPV 406
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 81.0 bits (191), Expect = 1e-15
Identities = 36/85 (42%), Positives = 56/85 (65%)
Frame = -3
Query: 829 LDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFA 650
LDRKIE+P PNE AR I++IH+ + + ++++E + + +D FNGA + VC EAG+ A
Sbjct: 339 LDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELARCTDDFNGAQCKAVCVEAGMIA 398
Query: 649 IRAEREYIIQEDLMKAVRKVADNKK 575
+R + I+ ED M A+ +V KK
Sbjct: 399 LRRDATEILHEDFMDAILEVQAKKK 423
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LDRK+E LP+ R ILKIHA ++ ++ Y+ + +L GA++R+VCTEAG
Sbjct: 336 PGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAG 395
Query: 658 LFAIRAEREYIIQEDLMKAVRKV 590
+FAIRA R+ ++D ++A+ KV
Sbjct: 396 MFAIRARRKVATEKDFLEAINKV 418
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/88 (40%), Positives = 57/88 (64%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKIE+P P+E+ R +I IH S + + YE V+ + +GA+++ VCTEAG
Sbjct: 342 PGRIDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLGKEKSISGAEIKAVCTEAG 401
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKK 575
+ A+RA+R+ + +D KAV+ V +KK
Sbjct: 402 MLALRAQRKCVGTDDFEKAVKSVMLSKK 429
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 74.9 bits (176), Expect = 7e-14
Identities = 35/88 (39%), Positives = 51/88 (57%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKIE PLP+E+ + I +IH S + E++ E + D +GAD++ +CTEAG
Sbjct: 347 PGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAG 406
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKK 575
L A+R R + ED K+ V KK
Sbjct: 407 LLALRERRMRVTMEDFQKSKENVLYRKK 434
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 73.7 bits (173), Expect = 2e-13
Identities = 38/96 (39%), Positives = 58/96 (60%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKIE P P+E+AR +ILKIH+ + ++ + + +GA++++VCTEAG
Sbjct: 318 PGRIDRKIEFPAPDEKARADILKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAG 377
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 551
+FA+R R ++ QED AV KV K E + K
Sbjct: 378 MFALRERRIHVTQEDFEMAVGKVM-QKDSEKNMSIK 412
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 73.7 bits (173), Expect = 2e-13
Identities = 38/96 (39%), Positives = 58/96 (60%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKIE P P+E+AR +ILKIH+ + + + + + +GA++++VCTEAG
Sbjct: 313 PGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAG 372
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 551
+FA+R R ++ QED AV KV K E + K
Sbjct: 373 MFALRERRIHVTQEDFEMAVGKVM-QKDSEKNMSIK 407
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 73.7 bits (173), Expect = 2e-13
Identities = 38/96 (39%), Positives = 58/96 (60%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P +DRKIE P P+E+AR +ILKIH+ + + + + + +GA++++VCTEAG
Sbjct: 334 PGRIDRKIEFPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAG 393
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKLDYK 551
+FA+R R ++ QED AV KV K E + K
Sbjct: 394 MFALRERRIHVTQEDFEMAVGKVM-QKDSEKNMSIK 428
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 61.7 bits (143), Expect = 7e-10
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LDRKIE PLP+ + + + S + ++D E V D +GAD+ ++C EAG
Sbjct: 320 PGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAG 379
Query: 658 LFAIRAEREYIIQEDLMKAVRKV 590
+ A+R R ++ +DL KA + V
Sbjct: 380 MQAVRENRYVVLTKDLEKAYKNV 402
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
DR+I+I +P+ RLEIL+IH + ++D E + F GADL ++C+EA L I
Sbjct: 370 DREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQI 429
Query: 646 RAEREYIIQED 614
R + E I ED
Sbjct: 430 REKMELIDLED 440
Score = 48.0 bits (109), Expect = 9e-06
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILK--IHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTE 665
P LD+ I IPLP+E +R +ILK + +P++K ++D + K + F+GADL +C
Sbjct: 643 PGRLDQLIYIPLPDEASRHQILKASLRKTPLSK--DLDLTFLAKNTVGFSGADLTEICQR 700
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLE 569
A AIR E I+ + + R+ + +E
Sbjct: 701 ACKLAIRESIEKEIRIEKERQDRQARGEELME 732
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 55.2 bits (127), Expect = 6e-08
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
DR+I+I +P+ RLEIL+IH + ++D E V F GADL ++C+EA + I
Sbjct: 369 DREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQI 428
Query: 646 RAEREYIIQED 614
R + E I ED
Sbjct: 429 REKMELIDLED 439
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LD+ I IPLP+E +RL+I K ++D + K + F+GADL +C A
Sbjct: 641 PGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRAC 700
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 560
AIR E I+++ + R + +E +L
Sbjct: 701 KLAIRESIEREIRQEKERQDRSARGEELMEDEL 733
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 55.2 bits (127), Expect = 6e-08
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
DR+I+I +P+ RLEIL+IH + ++D E V F GADL ++C+EA + I
Sbjct: 369 DREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQI 428
Query: 646 RAEREYIIQED 614
R + E I ED
Sbjct: 429 REKMELIDLED 439
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P LD+ I IPLP+E +RL+I K ++D + K + F+GADL +C A
Sbjct: 641 PGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRAC 700
Query: 658 LFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 560
AIR E I+++ + R + +E +L
Sbjct: 701 KLAIRESIEREIRQEKERQDRSARGEELMEDEL 733
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDT--FNGADLRNVCTE 665
P DR+I +P+P+ + R I ++H P+ + + + T F+GAD+ NVC E
Sbjct: 453 PGRFDRQIYVPVPDIKGRASIFRVHLGPLRTSLDKTVLSRKLAAHTPGFSGADISNVCNE 512
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKV 590
A L A R I + +A+ +V
Sbjct: 513 AALIAARDANHEISNKHFEQAIERV 537
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 552 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 611
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 612 AVLIGLRSRYPHI 624
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 550 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 609
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 610 AVLIGLRSRYPHI 622
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 552 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 611
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 612 AVLIGLRSRYPHI 624
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 552 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 611
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 612 AVLIGLRSRYPHI 624
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 550 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 609
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 610 AVLIGLRSRYPHI 622
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 552 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 611
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 612 AVLIGLRSRYPHI 624
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMD--YEAVVKLSDTFNGADLRNVCTE 665
P DR++ LP+ AR +IL IH S ++ + +A+ + + + GADL+ +CTE
Sbjct: 552 PGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTE 611
Query: 664 AGLFAIRAEREYI 626
A L +R+ +I
Sbjct: 612 AVLIGLRSRYPHI 624
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEM----DYEAVVKLSDTFNGADLRNVC 671
P L+ ++E+ LP+E RL+ILKIH + + ++ +M D E + K + F+GA+L +
Sbjct: 463 PGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLV 522
Query: 670 TEA 662
A
Sbjct: 523 RAA 525
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEM----DYEAVVKLSDTFNGADLRNVC 671
P L+ ++E+ LP+E RL+ILKIH + + ++ +M D E + K + F+GA+L +
Sbjct: 463 PGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLV 522
Query: 670 TEA 662
A
Sbjct: 523 RAA 525
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEM----DYEAVVKLSDTFNGADLRNVC 671
P L+ ++E+ LP+E RL+ILKIH + + ++ +M D E + K + F+GA+L +
Sbjct: 397 PGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLV 456
Query: 670 TEA 662
A
Sbjct: 457 RAA 459
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIA-KHGEMDY-EAVVKLSDTFNGADLRNVCTE 665
P DR I I LP R ++ +++ I H +Y + + L+ F GAD+ NVC E
Sbjct: 449 PGRFDRHISIDLPTVLERKDMFELYMRKIKLDHAPQEYSQRLAALTPGFTGADIMNVCNE 508
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 563
+ + A + + +D+ A+ +V + S+
Sbjct: 509 SAIRAASNKCHVVTHKDMEYALDRVLAGSEKRSR 542
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIA-KHGEMDY-EAVVKLSDTFNGADLRNVCTE 665
P DR I I LP R ++ +++ I H +Y + + L+ F GAD+ NVC E
Sbjct: 449 PGRFDRHISIDLPTVLERKDMFELYMRKIKLDHAPQEYSQRLAALTPGFTGADIMNVCNE 508
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 563
+ + A + + +D+ A+ +V + S+
Sbjct: 509 SAIRAASNKCHVVTHKDMEYALDRVLAGSEKRSR 542
>AC132211-4|AAN01432.2| 238|Caenorhabditis elegans Hypothetical
protein Y108F1.1 protein.
Length = 238
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIA-KHGEMDY-EAVVKLSDTFNGADLRNVCTE 665
P DR I I LP R ++ +++ I H +Y + + L+ +F GAD+ NVC E
Sbjct: 95 PGRFDRHISIDLPTVLERKDMFELYMRKIKLDHAPQEYSQRLAVLTPSFTGADIMNVCNE 154
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 563
+ + A + + +D+ A+ +V + S+
Sbjct: 155 SAIRAASNKCHVVTIKDMEYALDRVLAGSEKRSR 188
>AC024789-1|AAK85500.1| 238|Caenorhabditis elegans Hypothetical
protein Y47C4A.1 protein.
Length = 238
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIA-KHGEMDY-EAVVKLSDTFNGADLRNVCTE 665
P DR I I LP R ++ +++ I H +Y + + L+ +F GAD+ NVC E
Sbjct: 95 PGRFDRHISIDLPTVLERKDMFELYMRKIKLDHAPQEYSQRLAVLTPSFTGADIMNVCNE 154
Query: 664 AGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 563
+ + A + + +D+ A+ +V + S+
Sbjct: 155 SAIRAASNKCHVVTIKDMEYALDRVLAGSEKRSR 188
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P D ++ +P P+ R++I + S I G +D + + K S F GAD+ N+ +A
Sbjct: 357 PGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGGIDPKVLAKGSTGFTGADIENMVNQAA 416
Query: 658 LFA 650
L A
Sbjct: 417 LKA 419
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
+++I IPLP+ AR ++++ K E++Y+ + ++ F+GAD+ ++C A + +
Sbjct: 354 EKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVL 413
Query: 646 RAEREY 629
R Y
Sbjct: 414 RRYFRY 419
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/61 (27%), Positives = 37/61 (60%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
+++I IPLP+ AR ++++ K E++Y+ + ++ F+GAD+ ++C A + +
Sbjct: 354 EKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVL 413
Query: 646 R 644
R
Sbjct: 414 R 414
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/61 (27%), Positives = 37/61 (60%)
Frame = -3
Query: 826 DRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAI 647
+++I IPLP+ AR ++++ K E++Y+ + ++ F+GAD+ ++C A + +
Sbjct: 354 EKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVL 413
Query: 646 R 644
R
Sbjct: 414 R 414
>Z70205-8|CAO78730.1| 270|Caenorhabditis elegans Hypothetical
protein C11H1.4b protein.
Length = 270
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P D + P + RL+I+K+ + + K ++D+E + + +D ++GADL+ + T A
Sbjct: 159 PGRFDHHVYCGHPEKTERLDIMKVLTNKL-KPTDVDFECLAQKTDGWSGADLQLLFTNAQ 217
Query: 658 LFAIR--AEREYIIQED 614
+ R A+ E ++ED
Sbjct: 218 FYNARQIAKEEDGLEED 234
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical protein
C11H1.4a protein.
Length = 996
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P D + P + RL+I+K+ + + K ++D+E + + +D ++GADL+ + T A
Sbjct: 885 PGRFDHHVYCGHPEKTERLDIMKVLTNKL-KPTDVDFECLAQKTDGWSGADLQLLFTNAQ 943
Query: 658 LFAIR--AEREYIIQED 614
+ R A+ E ++ED
Sbjct: 944 FYNARQIAKEEDGLEED 960
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAG 659
P D + P + RL+I+K+ + + K ++D+E + + +D ++GADL+ + T A
Sbjct: 885 PGRFDHHVYCGHPEKTERLDIMKVLTNKL-KPTDVDFECLAQKTDGWSGADLQLLFTNAQ 943
Query: 658 LFAIR--AEREYIIQED 614
+ R A+ E ++ED
Sbjct: 944 FYNARQIAKEEDGLEED 960
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 36.7 bits (81), Expect = 0.022
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = -3
Query: 823 RKIEIPLPNEQARLEILKIHASPIAKHGEMDY--EAVVKLSDTFNGADLRNVCTEAGLFA 650
+++ I LP ++R +I++ + +H ++ E + +L+D ++GAD+R +CTEA +
Sbjct: 476 KRLYIALPEPESRTQIVQ-NLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGP 534
Query: 649 IRAEREYI--IQEDLMKAV 599
IR + I I +D ++AV
Sbjct: 535 IRDIGDDIETIDKDDIRAV 553
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 35.1 bits (77), Expect = 0.066
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKHGEM-DYEAVVKLSDTFNGADLRNVCTEA 662
P LDR I + LP E R IL++ + + + +V+ + ++GA+L VC A
Sbjct: 616 PGRLDRAIYVGLPCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRTA 675
Query: 661 GLFAIR 644
+FA+R
Sbjct: 676 AMFAMR 681
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = -3
Query: 820 KIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRA 641
+ ++P+PN + R +IL + + ++ + + ++ +G+DL+ VC A L +A
Sbjct: 241 RFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKA 300
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = -3
Query: 820 KIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRA 641
+ ++P+PN + R +IL + + ++ + + ++ +G+DL+ VC A L +A
Sbjct: 244 RFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKA 303
>U41029-1|AAF99951.1| 479|Caenorhabditis elegans Hypothetical
protein F47G3.3 protein.
Length = 479
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 584 QQKAGEQTGLQARLILNYNYHVTHLRGAKKKVLE 483
+Q+A EQT L + +Y+YH T+++ A VLE
Sbjct: 357 EQEAKEQTALDIKQASDYSYHYTNVQIAINDVLE 390
>Z79605-2|CAB01903.1| 342|Caenorhabditis elegans Hypothetical
protein ZK678.2 protein.
Length = 342
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -3
Query: 277 NCKVSKIEWLLPKL*KISITRLKLSNMC*KMLFSHWFSNCKS--HLKCFTDNYFKNAVSM 104
+C K+ + K+ K I+ N+C K S W S CKS LKC N+
Sbjct: 26 SCNACKLFFRRAKVSKTEISPCSNRNLCHKTKMSTWKSACKSCRLLKCVKAGMTLNSTDQ 85
Query: 103 N 101
N
Sbjct: 86 N 86
>U39645-3|AAA80362.3| 439|Caenorhabditis elegans Gustatory receptor
family protein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 135 LIIILRMQFQ*TFEIRSTKMLIISVNLFFLNXTLEIKIF 19
L ++ +M F TF+I STK+ + + N F+++ ++ + +F
Sbjct: 371 LTVLSQMTFF-TFQIHSTKLTLSACNYFYMDRSILLSLF 408
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = -3
Query: 838 PEXLDRKIEIPLPNEQARLEILKIHASPIAKH--GE-MDYEAVVKLSDT--FNGADLRNV 674
P LD+ + + P+ + R++IL+ + GE +D+ + +L + F GADL +
Sbjct: 690 PGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELAGFTGADLAAL 749
Query: 673 CTEAGLFAIRA 641
E+ L A++A
Sbjct: 750 IHESSLLALQA 760
>AF387605-1|AAK70488.1| 427|Caenorhabditis elegans putative
chemoreceptor GUR-2 protein.
Length = 427
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 135 LIIILRMQFQ*TFEIRSTKMLIISVNLFFLNXTLEIKIF 19
L ++ +M F TF+I STK+ + + N F+++ ++ + +F
Sbjct: 359 LTVLSQMTFF-TFQIHSTKLTLSACNYFYMDRSILLSLF 396
>Z49967-10|CAA90254.1| 553|Caenorhabditis elegans Hypothetical
protein F54C9.8 protein.
Length = 553
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 739 EMDYEAVVKLSDTFNGADLRNVC-TEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESK 563
EM + KL++ GA ++C + AG F I+ E+ ++ + VRK+ DN +E
Sbjct: 177 EMHFVLFDKLTE--QGAVFTSLCRSAAGNFIIQKFVEHATLDEQERLVRKMCDNGLIEMC 234
Query: 562 LD 557
LD
Sbjct: 235 LD 236
>Z50029-7|CAA90343.3| 447|Caenorhabditis elegans Hypothetical
protein ZC504.5 protein.
Length = 447
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 135 LIIILRMQFQ*TFEIRSTKMLIISVNLFFLNXTLEIKIF 19
L+++ +M F +F++ +TK+ + + N F +N + I +F
Sbjct: 374 LLVLSQMSFL-SFQMHATKLTLTAGNFFMMNRKIMISLF 411
>AF387606-1|AAK70489.1| 447|Caenorhabditis elegans putative
chemoreceptor GUR-3 protein.
Length = 447
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 135 LIIILRMQFQ*TFEIRSTKMLIISVNLFFLNXTLEIKIF 19
L+++ +M F +F++ +TK+ + + N F +N + I +F
Sbjct: 374 LLVLSQMSFL-SFQMHATKLTLTAGNFFMMNRKIMISLF 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,510
Number of Sequences: 27780
Number of extensions: 326148
Number of successful extensions: 724
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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