Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j12
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   8.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 641 GSDGEESGLRADV 679
           G+DG+ES  RAD+
Sbjct: 202 GNDGDESSCRADI 214


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 553 CSPVCSPAFCCRLLY 597
           C  +C+P   CRL Y
Sbjct: 63  CIKICAPGCVCRLGY 77


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 553 CSPVCSPAFCCRLLY 597
           C  +C+P   CRL Y
Sbjct: 63  CIKICAPGCVCRLGY 77


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 67  NDQHFRASNFKCSLKL 114
           N QH R +NF  S KL
Sbjct: 309 NKQHTRGNNFSLSRKL 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,690
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)