Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j09
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    28   1.4  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   3.3  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.4  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   7.6  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 661 PTV*LCCVGNVQYLYR*ILPTTARYCFRRFMYGLTQ*RNRAGVSNCAVWDSCAISILLTS 482
           PTV    + N  Y+    L     Y + +  Y + Q   + G+SN     SC  +   TS
Sbjct: 243 PTVPQAVIYNSPYIIT--LHNQYIYIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTS 297

Query: 481 NVYLWLVLAAD 449
           N Y+W++   D
Sbjct: 298 NSYVWILTPED 308


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 311 DMLLLRDEAVEDASPSGTAVLPNPGNP 231
           D +++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 569 HETSKTVA-RCCRQYSPIQILNITDTTQLNSRDARSGRIRIYHTAQKNKREVKHRRAHLN 745
           H+T+K  A R   +   +     +D T+ +S    SG+   ++    +K++++  + H  
Sbjct: 37  HKTAKLEAPRALIKRKQLSHSTSSDITR-HSNAKNSGKDTQFYEEPSSKQDIELHKLHEK 95

Query: 746 LKNGK*STEVPTSTSK 793
           L+NG+ +T+  +  SK
Sbjct: 96  LRNGQITTKEYSEKSK 111


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -2

Query: 278 DASPSGTAVLPNPGNPRPRASAKT--IKTIPRCAFGSFLCVAFVCAVLVET 132
           D+SP   + +P+   P P + A T  IK +    FG  L       VL  T
Sbjct: 67  DSSPKIPSAVPHISTPNPSSGASTPNIKRVSDFKFGEILGEGSYSTVLTAT 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,496,540
Number of Sequences: 5004
Number of extensions: 73858
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)