Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j09
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         36   0.053
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573...    29   4.6  
05_05_0272 - 23738514-23738817,23739382-23740748                       29   4.6  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   4.6  
10_01_0274 - 2901033-2901778,2902475-2902634                           28   8.1  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 112 NYKSPKHVSTRT--AHTNATHKKEPKAQRGIVFIVLALALGRGLPGFGNTAVP 264
           NY   K  +++    H NA  ++   A+RG      A A GRGL GFG+  VP
Sbjct: 110 NYCQRKFYTSQALGGHQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>10_06_0130 -
           11055305-11055593,11055666-11055949,11057271-11057398,
           11058522-11058606,11058917-11060872
          Length = 913

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 664 RKIRPNPHLPYCSKK*TGSKAPSCPPQPQKWEV 762
           R+I  N H+P    K +GS  PS PP   +WEV
Sbjct: 884 RRIIKNGHVP---AKTSGSGKPSRPPSSSEWEV 913


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 TNATHKKEPKAQRGIVFIVLALALGRGLPGFGNTAV 261
           TN T+K +PK Q G  F   +L + R   G+G  +V
Sbjct: 113 TNYTYKWQPKDQIGSFFYFPSLGMHRAAGGYGGISV 148


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 736 PPQPQKWEVKHRSAHLNLKNGK 801
           PP PQ ++V  R  H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 755 GK*STEVPTSTSKMGSKAPKCPP 823
           G+ + E P ST   G+ AP+CPP
Sbjct: 230 GQPAPEYPPSTPAYGTPAPECPP 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,147,872
Number of Sequences: 37544
Number of extensions: 509346
Number of successful extensions: 1475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)