Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17j09
(840 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL832804-1|CAI46888.1| 165|Homo sapiens hypothetical protein pr... 35 0.42
DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript varia... 31 5.2
DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript varia... 31 5.2
BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438... 31 5.2
BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript varia... 31 5.2
AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438... 31 5.2
AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438... 31 5.2
AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438... 31 5.2
AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens ... 31 5.2
AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein. 31 5.2
AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein pr... 31 5.2
>AL832804-1|CAI46888.1| 165|Homo sapiens hypothetical protein
protein.
Length = 165
Score = 34.7 bits (76), Expect = 0.42
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = +3
Query: 633 LPTQHS*TVGTQDPAESASTILLKKINGK*STVVPTSTSKMGSKAPKCPPQPQKWEVKHR 812
LPT S VGT A + + G TV+P SK ++A P P+ W+ + +
Sbjct: 39 LPTSASPVVGTTGTNHHAWLSMFSRDRGL--TVLPRDVSKSWAQAILLPWPPKVWDYRCK 96
Query: 813 SAHLDLHIL 839
S HL IL
Sbjct: 97 SPHLGCFIL 105
>DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 818
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 725
>DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript variant
2 protein.
Length = 818
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 725
>BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 735
>BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 735
>AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 735
>AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438
protein.
Length = 818
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 725
>AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438
protein.
Length = 392
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 299
>AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens
cDNA FLJ16387 fis, clone TRACH2007483, weakly similar
to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
Length = 779
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 686
>AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 299
>AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein
protein.
Length = 828
Score = 31.1 bits (67), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 448 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDS 549
H +RG+ + H EE SH CP+L+ HLH +
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQN 735
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,323,178
Number of Sequences: 237096
Number of extensions: 2797084
Number of successful extensions: 6418
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6417
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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