Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j09
         (840 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY128414-1|AAM75007.1|  311|Drosophila melanogaster GH04057p pro...    31   2.6  
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro...    31   2.6  
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio...    31   2.6  
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.    31   2.6  
AE014298-2029|AAF48366.1|  308|Drosophila melanogaster CG9400-PA...    31   2.6  
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P...    31   2.6  
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA...    31   2.6  
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD...    31   2.6  
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB...    31   2.6  
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC...    31   2.6  

>AY128414-1|AAM75007.1|  311|Drosophila melanogaster GH04057p
           protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 654 TVGTQDPAESA---STILLKKINGK*STVVP-TSTSKMGSKAPKCPPQPQKWEV--KHRS 815
           T+ T  PA S    +  L +  NG     VP T+    GS +P C P+P+  E+  + R 
Sbjct: 41  TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 100

Query: 816 AHLDLHIL 839
             LD+H L
Sbjct: 101 LLLDMHNL 108


>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
           protein.
          Length = 1153

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712 TGSKAPSCPPQPQKWEVKHRSAHL 783
           + S+ PS PPQPQ+++  H S H+
Sbjct: 127 SNSQPPSMPPQPQQFQSPHPSPHM 150



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747 SKMGSKAPKCPPQPQKWEVKHRSAHL 824
           S   S+ P  PPQPQ+++  H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150


>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
            corepressor Atro protein.
          Length = 1985

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712  TGSKAPSCPPQPQKWEVKHRSAHL 783
            + S+ PS PPQPQ+++  H S H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747  SKMGSKAPKCPPQPQKWEVKHRSAHL 824
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
          Length = 1966

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712  TGSKAPSCPPQPQKWEVKHRSAHL 783
            + S+ PS PPQPQ+++  H S H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747  SKMGSKAPKCPPQPQKWEVKHRSAHL 824
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014298-2029|AAF48366.1|  308|Drosophila melanogaster CG9400-PA
           protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 654 TVGTQDPAESA---STILLKKINGK*STVVP-TSTSKMGSKAPKCPPQPQKWEV--KHRS 815
           T+ T  PA S    +  L +  NG     VP T+    GS +P C P+P+  E+  + R 
Sbjct: 38  TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 97

Query: 816 AHLDLHIL 839
             LD+H L
Sbjct: 98  LLLDMHNL 105


>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
           protein.
          Length = 1161

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 631 HYRHNTAKQ*GRKIRPNPHLPYCSKK*TGSKAPSCPPQP 747
           H+ H+ + Q    ++  P  PY  K   G  APS PP P
Sbjct: 743 HHHHSHSHQKLGHLKSRPRNPYQRKTSVGMGAPSAPPPP 781


>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
            isoform A protein.
          Length = 1966

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712  TGSKAPSCPPQPQKWEVKHRSAHL 783
            + S+ PS PPQPQ+++  H S H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747  SKMGSKAPKCPPQPQKWEVKHRSAHL 824
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
            isoform D protein.
          Length = 1985

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712  TGSKAPSCPPQPQKWEVKHRSAHL 783
            + S+ PS PPQPQ+++  H S H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747  SKMGSKAPKCPPQPQKWEVKHRSAHL 824
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
            isoform B protein.
          Length = 1985

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712  TGSKAPSCPPQPQKWEVKHRSAHL 783
            + S+ PS PPQPQ+++  H S H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747  SKMGSKAPKCPPQPQKWEVKHRSAHL 824
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
            isoform C protein.
          Length = 1988

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 712  TGSKAPSCPPQPQKWEVKHRSAHL 783
            + S+ PS PPQPQ+++  H S H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982



 Score = 29.9 bits (64), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 747  SKMGSKAPKCPPQPQKWEVKHRSAHL 824
            S   S+ P  PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,631,733
Number of Sequences: 53049
Number of extensions: 863438
Number of successful extensions: 2508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)