Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17j09
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 30 1.8
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 28 9.5
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 9.5
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -2
Query: 380 GCNFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 201
GC + Y + ++ V G L R E+ GTA P+ NP P + + I
Sbjct: 12 GC--YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCIN 68
Query: 200 TIPRCAFG 177
+ +C G
Sbjct: 69 NVCQCRSG 76
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = -2
Query: 365 CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 213
C +TE VD DV G RD+L ++DE ++ED P P +P P A+
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725
Query: 212 KTIK 201
++
Sbjct: 1726 GAVQ 1729
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = -2
Query: 365 CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 213
C +TE VD DV G RD+L ++DE ++ED P P +P P A+
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725
Query: 212 KTIK 201
++
Sbjct: 1726 GAVQ 1729
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2346 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2387
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2252 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2293
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2439 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2480
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2346 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2387
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2252 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2293
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2439 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2480
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
protein W05B2.4 protein.
Length = 2265
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 596 CCRQYSPIQILNITDTTQLNSRD--ARSGRIRIYHTAQKNKREVKHRRAHL 742
C +Y+ I+ N+ D Q +D AR +I YH KN RE+ R L
Sbjct: 141 CAERYALIE--NVADGYQKRVKDELARLNKIEKYHHHVKNNREILLRSQSL 189
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 671 SGRIRIYHTAQKNKREVKHRRAHLNLKNGK*STEVPTSTSKMGS 802
SG+ + H + R ++HRR N +NG S + T+T GS
Sbjct: 2438 SGKRKRKHLGNRRGRRLRHRRR--NAQNGPLSRKTRTTTKLFGS 2479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,826,436
Number of Sequences: 27780
Number of extensions: 440032
Number of successful extensions: 1392
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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