Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j03
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    29   0.46 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.5  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    25   5.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   5.7  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   7.5  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   7.5  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 347 GYRDALLQIFICVSSRLNIHHELVNV 424
           GYR      ++CV S  ++H+E VN+
Sbjct: 67  GYRPPSFSFYLCVKSIFHVHNESVNI 92


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 267  SFLLCFVRDGRPEKSRAILTLQARLRVDIVTRYSKFLYAYL 389
            S LL ++R  R  +     T Q RLR  IV RYS   ++ L
Sbjct: 1843 SVLLFWLRPSRQIRPPIFSTKQNRLRKRIVRRYSALYFSIL 1883


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 323 NTAGASPRGYRDALLQIFICVSSRLNIHHELVNVSAVHTKNPPCRLMHASGSASMH 490
           NT  AS   Y       FI +S  LN+ +   + S   +  PP +++      S H
Sbjct: 184 NTREASNNTYLYGFSNNFINISRTLNLRYPSASASISDSLPPPYQVLSVPSVTSTH 239


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 356 DALLQIFICVSSRLNIHH 409
           DA L++F  VSSRL  HH
Sbjct: 740 DARLRLFHTVSSRLRTHH 757


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 410 ELVNVSAVHTKNPPCRLMHASGSASMHRPTPGKK 511
           +L  + A H K+P  R++H   ++++ R   GKK
Sbjct: 292 QLEQIKAEHEKDPSQRIVHKYLASNVVRMVHGKK 325


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 PLGHGACSNRSYCVLFATVVQKKVA 315
           P+ HG+C+   +     +V+Q ++A
Sbjct: 180 PINHGSCTKEEFAEKAVSVIQARIA 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,949
Number of Sequences: 5004
Number of extensions: 47827
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)