Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j03
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical ...    28   5.2  
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81070-2|CAB03007.1|  491|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical
           protein E03H12.3 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 318 ILTLQARLRVDIVTRYSKFLYAYLHDLIYTTNW 416
           I  +Q++   D V + +KF+  Y  D  YTT W
Sbjct: 205 IAGMQSKKEFDYVLKTAKFITGYTPDYQYTTVW 237


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
           protein C50C3.2 protein.
          Length = 2107

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 377 ICVSSRLNIHHELVNVSAVHTKNPP-CRLMHASGSASMHRPTPGKKHDDREVLLSLSLNI 553
           IC S + +I  +L  ++ V+T N P C L     S         +K DD + LL ++ N+
Sbjct: 633 ICASYKKSIDSKLEELANVYTDNDPRCLLEGIQNSVENFEVKIHQKVDDTKKLLHITENM 692


>Z81070-2|CAB03007.1|  491|Caenorhabditis elegans Hypothetical
           protein F26E4.3 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 540 KESSTSRSSC---FFPGVGRCILADPDACIRRHGGFFVWTAETFTNSW 406
           KE +  + +C   F+   G   L  PD   + H G + W+A  ++  W
Sbjct: 142 KEKNCEKCTCHNGFWKCDGTACLIQPDILEKIHTGRYSWSARNYSAFW 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,084
Number of Sequences: 27780
Number of extensions: 272278
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)