Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17j03
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   0.90 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   6.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 313 RLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQLLFII 182
           ++ S   ++T HN N+Y   +     N   N N +N  +L + I
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 343 RRRACSVKIARLFSGRPSRTKHNKNDYYRRHDPRATNRRINPNTSNLPQL 194
           RR     K +++ S   ++T HN N+Y      +  N+++  N  N+ Q+
Sbjct: 303 RRERERSKESKIISSLSNKTIHNNNNY------KNYNKKLYYNIINIEQI 346


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 330 QARLRVDIVTRYSKFLYAYLHDLIYTTNW*TF 425
           +AR+R   + R S+  + +L  ++  T W  F
Sbjct: 393 KARMRALNIDRVSRVFFPFLFAVLNVTYWIMF 424


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 474 DRQVCTVLRLERSMTTEKCYFL 539
           DRQVC++       TT+   FL
Sbjct: 170 DRQVCSLRMASYGWTTDDLVFL 191


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 474 DRQVCTVLRLERSMTTEKCYFL 539
           DRQVC++       TT+   FL
Sbjct: 170 DRQVCSLRMASYGWTTDDLVFL 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,718
Number of Sequences: 438
Number of extensions: 3543
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)