Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17i24
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 34 0.015
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 33 0.035
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 33 0.035
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.080
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.18
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.24
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.43
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 28 0.98
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.3
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 1.3
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 1.7
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 1.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 5.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.2
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 6.9
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 6.9
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 6.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.1
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.1
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.1
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 34.3 bits (75), Expect = 0.015
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Frame = -1
Query: 597 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELR 427
N++ +QT+ DL+ + E + +K L ++ ET KND N E +E
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372
Query: 426 LNELDAKLNMLQS----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSE 286
+ E KLN ++ A++LK + ++ES K G + F +++ + L ++ E
Sbjct: 373 MKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQE 431
Query: 285 RIDDRIKLAFVLGQERHFRKRKMRFED 205
+I IK E FRK + E+
Sbjct: 432 QIQSSIK-----DMENVFRKNEYLMEE 453
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 33.1 bits (72), Expect = 0.035
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -1
Query: 612 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFE 442
F+ ++ + T G + + + IE +L ++ +S F+ T+ + K++V F
Sbjct: 559 FEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFS 618
Query: 441 QFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVT 334
F+L+L L L++LQS + + S+ G T
Sbjct: 619 DFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 33.1 bits (72), Expect = 0.035
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 573 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 394
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
Query: 393 QSA 385
A
Sbjct: 433 VDA 435
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 31.9 bits (69), Expect = 0.080
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = -1
Query: 579 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 400
+ EG++ DL KI + K KLNT ++T + + ++ E R+ L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567
Query: 399 MLQSAEKLKTAIVTESK 349
MLQ ++ AI + S+
Sbjct: 568 MLQKL-SMQPAISSSSE 583
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.18
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 468 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 310
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.24
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = -1
Query: 573 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 394
E +L E+ +K ++ TNS+ V+ + N++ ++ ++ +L+LNE + K L
Sbjct: 554 ENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
Score = 28.3 bits (60), Expect = 0.98
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 513 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 346
L NSEKF E+ K+ V N + NE+D + N+L + +T KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.43
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 336
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 28.3 bits (60), Expect = 0.98
Identities = 15/78 (19%), Positives = 34/78 (43%)
Frame = -1
Query: 624 MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 445
M FD N + ++ GE +++ ++ + + +LNT + E + RF
Sbjct: 133 MNSRFDTVQNEMTSMK--GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRF 190
Query: 444 EQFELRLNELDAKLNMLQ 391
+ R N +D + + ++
Sbjct: 191 NSIDQRFNSIDRRFDSME 208
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -1
Query: 561 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 397
D+ + ++ ++K KKL ++E+ H T K N +G F + ++ L +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267
Query: 396 LQ 391
+
Sbjct: 268 FE 269
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 159 AIQCINEKLYDKHXKIRKIAKRVI 88
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/78 (19%), Positives = 34/78 (43%)
Frame = -1
Query: 624 MRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 445
M FD N + ++ GE +++ ++ + + +LNT + E + RF
Sbjct: 133 MNSRFDAVQNEMTSMK--GEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRF 190
Query: 444 EQFELRLNELDAKLNMLQ 391
+ R N +D + + ++
Sbjct: 191 NSIDQRFNSIDRRFDSME 208
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 537 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 358
+ L H+ L + H TFK++V N +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
Query: 357 ES 352
S
Sbjct: 409 GS 410
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 609 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 436
D +SN +H ++ +DLR KI + + V K+N E +T E K + + +Q
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644
Query: 435 ELRLNE 418
L++ E
Sbjct: 645 SLKVFE 650
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 5.2
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -1
Query: 618 LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 439
+N N+ +HL L DK + L + K TN+ KF V ET +G Q
Sbjct: 567 INLLRDENSYVHLNVISAVVSLCDKYDDSLIRLLKEYTNTNKFTV-DETLL--IGQAIYQ 623
Query: 438 FELRLNELDAK 406
R EL AK
Sbjct: 624 TMERQGELVAK 634
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 355 FRYDGGFQFFGR---LQHVKFGVEFVQTQFKLLK--PVAHIVLERFVGDHKFFAVCIQ 513
+ YD FQ +Q+ ++ +Q FK PVA +LER+V K + CI+
Sbjct: 253 YYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYEGCIK 310
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 186 DGVHPNPLLAIQCINEKLYD 127
D ++PN L ++ INEK +D
Sbjct: 5 DAINPNNLKILEVINEKCFD 24
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 396 LQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERID--DRIKLAF 256
+ +A LK+ I ESK P D+T+ Q +F + I R+ LA+
Sbjct: 41 VNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 480 HETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAI-VTESKNGTVTFPRDIT 316
HE F GN F Q +L L D + + +T+I V +S TF +D T
Sbjct: 367 HEDFIFHEGNHFRQLKLILEANDILHQLFLRGDWTETSIFVGDSIRVEATFDKDNT 422
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 287 NASTTASNSLLFWAKSDIFASEKCALKTT 201
+A T AS S W K FAS KC T
Sbjct: 663 SAVTKASTSYKVWKKKLNFASRKCVKSFT 691
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 627 LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 529
LMR +F+ L+ GE+DD + E+++
Sbjct: 1403 LMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 567 ERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGNRFEQFELRLNELDAKLNMLQ 391
+RD+ IES L+ V KL SE F + + T K ++ R + LNE + L
Sbjct: 32 KRDEFSRDIESELEKVAKL--KSESFSLKGKITQKEELTYRLQNLAASLNEKKSLSCDLH 89
Query: 390 SAEKL 376
S ++L
Sbjct: 90 SRKQL 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,178
Number of Sequences: 5004
Number of extensions: 49789
Number of successful extensions: 191
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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