Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17i24
(636 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY396742-1|AAR91620.1| 784|Homo sapiens repetin protein. 34 0.37
AY219924-1|AAP48705.1| 784|Homo sapiens repetin protein. 34 0.37
AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dy... 33 1.1
U25725-1|AAA86889.1| 1017|Homo sapiens AH antigen protein. 32 1.5
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 32 2.0
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 32 2.0
L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated prote... 32 2.0
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 32 2.0
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 32 2.0
U27109-1|AAC52065.1| 1228|Homo sapiens prepromultimerin protein. 31 2.6
BC063848-1|AAH63848.1| 1228|Homo sapiens multimerin 1 protein. 31 2.6
AC093759-2|AAY40957.1| 1228|Homo sapiens unknown protein. 31 2.6
AL512506-1|CAI16114.1| 273|Homo sapiens novel protein protein. 31 3.4
BC033900-1|AAH33900.1| 335|Homo sapiens NDE1 protein protein. 31 4.5
BC001421-1|AAH01421.1| 335|Homo sapiens nudE nuclear distributi... 31 4.5
AK000108-1|BAA90949.1| 335|Homo sapiens protein ( Homo sapiens ... 31 4.5
>AY396742-1|AAR91620.1| 784|Homo sapiens repetin protein.
Length = 784
Score = 34.3 bits (75), Expect = 0.37
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 430 AFERTRRQT*HAAVGRKIENRHRNGKQKWHGDVSA-RHYQTPAFGHIFGTHRRPHQTRFC 254
+F+++ RQ+ ++ G+K+ ++ +G+ KW G + A + P +G R Q
Sbjct: 193 SFDQSERQSQDSSSGKKVSHKSTSGQAKWQGHIFALNRCEKPIQDSHYGQSERHTQQSET 252
Query: 253 FGPRATFSQ 227
G + F+Q
Sbjct: 253 LGQASHFNQ 261
>AY219924-1|AAP48705.1| 784|Homo sapiens repetin protein.
Length = 784
Score = 34.3 bits (75), Expect = 0.37
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 430 AFERTRRQT*HAAVGRKIENRHRNGKQKWHGDVSA-RHYQTPAFGHIFGTHRRPHQTRFC 254
+F+++ RQ+ ++ G+K+ ++ +G+ KW G + A + P +G R Q
Sbjct: 193 SFDQSERQSQDSSSGKKVSHKSTSGQAKWQGHIFALNRCEKPIQDSHYGQSERHTQQSET 252
Query: 253 FGPRATFSQ 227
G + F+Q
Sbjct: 253 LGQASHFNQ 261
>AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dynein
type 3 protein.
Length = 4116
Score = 32.7 bits (71), Expect = 1.1
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = -1
Query: 612 FDNKSNALLHLQTEGERDDLRDKIESVLK---HVKKLNTNSEKFMVTHETFKNDVGNRFE 442
FDN N LLH + + E D ++ E L+ + ++L + ++ ++T E K++V +
Sbjct: 768 FDNSRNLLLHKRDQAEMDLIKRCSEFELRLEGYHRELESFRKREVMTTEEMKHNV-EKLN 826
Query: 441 QFELRLNELDAKLNMLQSAEKL 376
+ LN A+ ++ E+L
Sbjct: 827 ELSKNLNRAFAEFELINKEEEL 848
>U25725-1|AAA86889.1| 1017|Homo sapiens AH antigen protein.
Length = 1017
Score = 32.3 bits (70), Expect = 1.5
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Frame = -1
Query: 633 KILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF 469
K+ +R+ D K LH+ + +GE D L+DK+E++ + ++ N E ++ E
Sbjct: 26 KLRVRIEADEKKQ--LHIAEKLKERDGENDSLKDKVENLERELQMSEENQELVILDAENS 83
Query: 468 KNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESK 349
K +V + E+ L + L L+S ++ T + E +
Sbjct: 84 KAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQ 126
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 31.9 bits (69), Expect = 2.0
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Frame = -1
Query: 633 KILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF 469
K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++ E
Sbjct: 2122 KLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVILDAENS 2179
Query: 468 KNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLA 298
K +V + E+ L + L L+S ++ T + E + + ++ + L
Sbjct: 2180 KAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLL 2239
Query: 297 IFSERIDDRIK 265
E+ + +IK
Sbjct: 2240 EEKEQAEIQIK 2250
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 31.9 bits (69), Expect = 2.0
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Frame = -1
Query: 633 KILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF 469
K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++ E
Sbjct: 2219 KLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVILDAENS 2276
Query: 468 KNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLA 298
K +V + E+ L + L L+S ++ T + E + + ++ + L
Sbjct: 2277 KAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLL 2336
Query: 297 IFSERIDDRIK 265
E+ + +IK
Sbjct: 2337 EEKEQAEIQIK 2347
>L40157-1|AAA79121.1| 1410|Homo sapiens endosome-associated protein
protein.
Length = 1410
Score = 31.9 bits (69), Expect = 2.0
Identities = 24/101 (23%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Frame = -1
Query: 564 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD----AKLNM 397
+++L D+++ H++ ++ +++ ET N++ ++ + + ++++LD AK +
Sbjct: 595 QENLHDQVQEQKAHLRA----AQDRVLSLETSVNELNSQLNESKEKVSQLDIQIKAKTEL 650
Query: 396 LQSAEKLKTAIVTESKNGTVTFPRDI-TKHQHLAIFSERID 277
L SAE KTA + +N T + KHQ L + ++D
Sbjct: 651 LLSAEAAKTAQRADLQNHLDTAQNALQDKHQELNKITTQLD 691
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 31.9 bits (69), Expect = 2.0
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Frame = -1
Query: 633 KILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF 469
K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++ E
Sbjct: 2123 KLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVILDAENS 2180
Query: 468 KNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLA 298
K +V + E+ L + L L+S ++ T + E + + ++ + L
Sbjct: 2181 KAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLL 2240
Query: 297 IFSERIDDRIK 265
E+ + +IK
Sbjct: 2241 EEKEQAEIQIK 2251
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 31.9 bits (69), Expect = 2.0
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Frame = -1
Query: 633 KILMRLNFDNKSNALLHL-----QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF 469
K+ +R+ D K LH+ + E E D L+DK+E++ + ++ N E ++ E
Sbjct: 2123 KLRVRIEADEKKQ--LHIAEKLKERERENDSLKDKVENLERELQMSEENQELVILDAENS 2180
Query: 468 KNDV---GNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLA 298
K +V + E+ L + L L+S ++ T + E + + ++ + L
Sbjct: 2181 KAEVETLKTQIEEMARSLKVFELDLVTLRSEKENLTKQIQEKQGQLSELDKLLSSFKSLL 2240
Query: 297 IFSERIDDRIK 265
E+ + +IK
Sbjct: 2241 EEKEQAEIQIK 2251
>U27109-1|AAC52065.1| 1228|Homo sapiens prepromultimerin protein.
Length = 1228
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 555 LRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 376
+R KIE++ V LN ++ H +N+V R + E R+NE L M K
Sbjct: 674 IRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY--ALEMEDGLNKT 731
Query: 375 KTAI 364
T I
Sbjct: 732 MTII 735
>BC063848-1|AAH63848.1| 1228|Homo sapiens multimerin 1 protein.
Length = 1228
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 555 LRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 376
+R KIE++ V LN ++ H +N+V R + E R+NE L M K
Sbjct: 674 IRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY--ALEMEDGLNKT 731
Query: 375 KTAI 364
T I
Sbjct: 732 MTII 735
>AC093759-2|AAY40957.1| 1228|Homo sapiens unknown protein.
Length = 1228
Score = 31.5 bits (68), Expect = 2.6
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 555 LRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 376
+R KIE++ V LN ++ H +N+V R + E R+NE L M K
Sbjct: 674 IRKKIENLTSAVNSLNFIIKELTKRHNLLRNEVQGRDDALERRINEY--ALEMEDGLNKT 731
Query: 375 KTAI 364
T I
Sbjct: 732 MTII 735
>AL512506-1|CAI16114.1| 273|Homo sapiens novel protein protein.
Length = 273
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/64 (25%), Positives = 35/64 (54%)
Frame = -1
Query: 579 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 400
Q + + +L+DKI +V + + + E+ THE + ++ + ++++ L L ++N
Sbjct: 183 QVQEDITNLKDKIITVKESIIEKTCFLEEEKKTHEKLRKEIEVQHKRYDAILKRLHCQVN 242
Query: 399 MLQS 388
LQS
Sbjct: 243 KLQS 246
>BC033900-1|AAH33900.1| 335|Homo sapiens NDE1 protein protein.
Length = 335
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -1
Query: 555 LRDKIESVLKHVKKLNTNSEKF----MVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 388
++D+++ ++ +++ N + E+ +++ E F+ + E+ +ELD K N+L+S
Sbjct: 106 IKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLES 165
Query: 387 AEKLK 373
++LK
Sbjct: 166 VQRLK 170
>BC001421-1|AAH01421.1| 335|Homo sapiens nudE nuclear distribution
gene E homolog 1 (A. nidulans) protein.
Length = 335
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -1
Query: 555 LRDKIESVLKHVKKLNTNSEKF----MVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 388
++D+++ ++ +++ N + E+ +++ E F+ + E+ +ELD K N+L+S
Sbjct: 106 IKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLES 165
Query: 387 AEKLK 373
++LK
Sbjct: 166 VQRLK 170
>AK000108-1|BAA90949.1| 335|Homo sapiens protein ( Homo sapiens
cDNA FLJ20101 fis, clone COL04655. ).
Length = 335
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/65 (23%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = -1
Query: 555 LRDKIESVLKHVKKLNTNSEKF----MVTHETFKNDVGNRFEQFELRLNELDAKLNMLQS 388
++D+++ ++ +++ N + E+ +++ E F+ + E+ +ELD K N+L+S
Sbjct: 106 IKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLES 165
Query: 387 AEKLK 373
++LK
Sbjct: 166 VQRLK 170
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,304,020
Number of Sequences: 237096
Number of extensions: 1602367
Number of successful extensions: 4358
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4355
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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