Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i24
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.6  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = -1

Query: 561 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 382
           DD+   +E   + + +     E  +       ND      +F++ LN+ D  +++  S  
Sbjct: 36  DDIDSLLEDESERMLRKRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIR 95

Query: 381 KLKTAIVTESKN 346
           K+    V  +KN
Sbjct: 96  KIIRQCVDNAKN 107


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 552 RDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 418
           RD+I   +     +NT  E+  +T +   + +GN  E   L  N+
Sbjct: 314 RDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQ 358


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 207 DDMEVLYDGVHPNPLLAIQCINEKLYDKHXKIRKIAKR 94
           +DM VL   +   PL     + ++ Y  H K R + ++
Sbjct: 616 EDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRQK 653


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = +2

Query: 251 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 412
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 256 KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 309


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 9   NYYTWFLFYNTSWYNLFNYIMSTI 80
           NY  W+L ++ +  N  NY +  I
Sbjct: 204 NYSGWYLNHDYNLENKLNYFIEDI 227


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -1

Query: 495 KFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 376
           K++  H  F   +GN ++  + ++  LDA  N +     L
Sbjct: 574 KWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPL 613


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = +2

Query: 251 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 412
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 6   KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,924
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)