Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i23
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    29   4.1  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    28   9.5  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    28   9.5  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    28   9.5  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    28   9.5  

>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/116 (20%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
 Frame = -3

Query: 758 VECFVNAKTLMNLFKNNIKG-SDDI-NEVFKYLKDNENQIFTI-YNIKCQQIFNGANVYM 588
           ++ F + +T+ +  + +++  +DD+ NE+ +  +     + T+ Y+ +  ++ +G+ +  
Sbjct: 330 IDAFPDIQTVRSAMQTHLRFCADDLKNELSRTTQGCRLALETLTYSGRDYRVIHGSRISP 389

Query: 587 NWNVVNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEEN 420
           +W    S  + + +AKENE+ + + N       ++R+  R+   N N   ++LE N
Sbjct: 390 DWKW-RSNILGVFKAKENESLNEMINLVVHNYELNRTFLRITIPNSN---NDLEGN 441


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 566 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 387
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320

Query: 386 KSD 378
           +++
Sbjct: 321 ETN 323


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 566 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 387
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337

Query: 386 KSD 378
           +++
Sbjct: 338 ETN 340


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 566 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 387
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337

Query: 386 KSD 378
           +++
Sbjct: 338 ETN 340


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = -3

Query: 566 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 387
           T  E  E K+ +  +N +NC   R N     K+        ++    +N+M +N  +  +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320

Query: 386 KSD 378
           +++
Sbjct: 321 ETN 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,498
Number of Sequences: 27780
Number of extensions: 364621
Number of successful extensions: 1167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)