Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i20
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   228   9e-61
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   227   1e-60
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    29   0.64 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   2.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.4  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   4.5  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  228 bits (557), Expect = 9e-61
 Identities = 115/218 (52%), Positives = 152/218 (69%), Gaps = 2/218 (0%)
 Frame = -1

Query: 861 ARGHIFEKIPELPLVVADKVQEINKTKQAVXFLRRLKAWXDILKVYKSQRLRAGKGKMRN 682
           ARGH  E+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RN
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRN 198

Query: 681 RRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFG 502
           RR +QR+GPL++FN+D G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG
Sbjct: 199 RRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFG 258

Query: 501 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKL 328
            LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K 
Sbjct: 259 LLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKK 318

Query: 327 NPLTNNKAMLRLNPYAAVLKRKAILELRRRKNLKALAD 214
           NPL N   + RLNPYA     KA ++L   K  KA  +
Sbjct: 319 NPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  227 bits (556), Expect = 1e-60
 Identities = 114/218 (52%), Positives = 152/218 (69%), Gaps = 2/218 (0%)
 Frame = -1

Query: 861 ARGHIFEKIPELPLVVADKVQEINKTKQAVXFLRRLKAWXDILKVYKSQRLRAGKGKMRN 682
           ARGH  E+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RN
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRN 198

Query: 681 RRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFG 502
           RR +QR+GPL++FN+D G+ +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG
Sbjct: 199 RRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFG 258

Query: 501 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKL 328
            LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K 
Sbjct: 259 LLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKK 318

Query: 327 NPLTNNKAMLRLNPYAAVLKRKAILELRRRKNLKALAD 214
           NPL N   + RLNPYA     KA +++   K  KA  +
Sbjct: 319 NPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -1

Query: 396 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLRLNPYAAVLKRKAILELRRRKNLKA-- 223
           +S  +  +    +K+ IR  R+L+P    ++  R N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 222 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 133
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 539 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 405
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 26/109 (23%), Positives = 46/109 (42%)
 Frame = -1

Query: 462  KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLRLNPY 283
            KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  +++ +P 
Sbjct: 730  KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 282  AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 136
              +  ++   +      +  L   ++    L+KRN   K +      RK
Sbjct: 788  PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
 Frame = +1

Query: 499 PAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEG----ASQTLILVEDYEGPLT 666
           P E   SP    S  TS  Q   + +   Q+L    V++      S T ++ + YE PLT
Sbjct: 93  PRELQTSPI--VSPTTSPKQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYEFPLT 150

Query: 667 LDTTTVAHFTLTSTKTLRLVHLKDIXPCLE 756
            D    +      T      HL+    CLE
Sbjct: 151 RDLIRRSKSDADQTPPTGFKHLRH-SSCLE 179


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 533 VSSSGLSPHSAGLTPYSGHGRHHRNK 456
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,183
Number of Sequences: 5004
Number of extensions: 53743
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)