Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i19
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0025 - 25165438-25165708,25165807-25166048,25166191-251662...    30   2.1  
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    28   8.5  
05_07_0290 + 29016410-29018920                                         28   8.5  

>02_05_0025 -
           25165438-25165708,25165807-25166048,25166191-25166222,
           25167174-25167231,25167331-25167438
          Length = 236

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -1

Query: 409 EVATKIFIEAFEYSYTNTNAISMDKTDEFDFIKQPTLKSLPDARPPSLLTSVMNERKRK 233
           EV ++++   F++  T+TN+  ++   +FD +  PT +       P+ L S   +RKRK
Sbjct: 102 EVCSRVW---FDWFGTSTNSRPVESETQFDTVSDPT-RQTDSITEPTFLWSEEEKRKRK 156


>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 577 YFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHL 425
           YF + ++I+   + +L+  NP  +S+ R      + C   +D P T   H+
Sbjct: 337 YFAAAEDIMSTNVCQLSSKNPSTRSNKRKA----SSCASTIDGPTTSTSHV 383


>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 754 EIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDDSIDY 641
           E  +    +Y  +PT +NY  +  L  R  Y+D+++D+
Sbjct: 585 EYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDF 622


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,163,715
Number of Sequences: 37544
Number of extensions: 338717
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)