Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i19
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    28   7.5  
AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U41012-4|AAA82296.2|  413|Caenorhabditis elegans Hypothetical
           protein C06A6.5 protein.
          Length = 413

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 850 NFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARD--RYFNEPTQKNYEYI 689
           NF D D F +Q +TDKC  L++       N+ E+ E+      YF +P  K  + +
Sbjct: 218 NFNDYD-FVKQWVTDKCIPLVREVTF--ENVEELTEEGMPFLIYFRDPDNKTTDKV 270


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 733 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 557
           D   N+PT K    +KK  L+   ++ ++   D  ++I+     K++    AS  P   E
Sbjct: 281 DAISNQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340

Query: 556 IIEVAIKR 533
           I EV +K+
Sbjct: 341 IPEVEVKK 348


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -1

Query: 562 KEIIEVAIKRLNKINPDLK---SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKI 392
           + I   A+   N  N +L     +   M + ++EC EN  NPV  +  +  +  E  +  
Sbjct: 652 RTITHQAVSNWNAKNVNLNFRFGAHNVMAEKFHECPENFKNPVNIQ-FVAPWNIEPVSAN 710

Query: 391 FIEAFEYSYTNTNAISMDKTDEFDF 317
            +E+ E     T+ I +   D+ D+
Sbjct: 711 LLESVEIKLQYTDDILLTIEDQLDY 735


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 683 FFNVFIVFLSWLIKIPVSGLFYNL*NV---CRQQIRIFD 790
           F+ VF++++ WL+ +   G+FY         R++I  FD
Sbjct: 282 FYKVFLIWIPWLLLMKRPGVFYKKRRATVQAREEISFFD 320


>AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical
           protein Y67D8C.4 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 565 YKEIIEVAIKRLNKINPDLKSSPRAM--LQHYNECLENLDNPVTDEHHLLT 419
           +KE+    ++ L+ I+    S+P+A+  L   + C E++DNP+  + H ++
Sbjct: 49  HKELGRCPLEVLHSIHNFEPSTPQAVFELDESSNCQESIDNPMKRQKHFVS 99


>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = +2

Query: 275 RSCIWQRFQCRLFNKIKFICLVHADGISVGVTVFKRFDEYF 397
           + CI+    C  FN+++ +C++  + +  G  ++ + +  F
Sbjct: 29  QKCIFSNLNCTDFNRLRRVCVLFKEYVDAGEPMYDKIEIEF 69


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -2

Query: 111 YVVAFLFLIS*FSNKVVSYFCFCTVTVS---WFNKI 13
           ++V F+F+IS + ++++ Y  FC + ++   +FN I
Sbjct: 155 FLVPFIFIISTYFSEILQYGYFCVIAITSLVYFNVI 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,464
Number of Sequences: 27780
Number of extensions: 361496
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)