Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i18
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855...    29   2.5  
01_05_0490 + 22672241-22674679                                         28   4.3  
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258...    27   10.0 
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765...    27   10.0 
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100...    27   10.0 

>01_06_1664 -
           38984545-38984615,38984706-38984802,38985362-38985523,
           38985736-38985825,38986125-38986226,38986373-38986446,
           38986587-38986615,38986766-38986989
          Length = 282

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 411 CCSATEACAPDPTRRTTLIVLYFKSQAK*WP-LCKTTDFRVSKEPCLPLLKSKNLPRYW 238
           CC+    C  +P +  T+  L+       WP  C+ T F + K   LPL     L +YW
Sbjct: 67  CCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRHTSFDMDK--ILPL--KPTLEKYW 121


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 377 GSGAHASVALQHYIGVRXSENETAGGAKI 463
           G+G  AS A   Y+ +   EN  AGGAK+
Sbjct: 14  GAGPGASGATTSYMSIDGEENGGAGGAKV 42


>06_02_0092 -
           11624905-11625123,11625206-11625292,11625767-11625889,
           11625992-11626351,11626427-11626511,11626603-11626661,
           11627173-11627265,11627360-11627464,11627539-11627636,
           11627811-11627916,11628009-11628131,11628986-11629021,
           11629113-11629310,11629415-11629612,11629917-11630056,
           11630181-11630322,11630416-11630556
          Length = 770

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 296 RKSVVLQSGHHFAWLLKYKTINVVRRVGSGAHASVALQHYIGVRXSENETAGG 454
           R + +  +   F W+LK  +++ + R  SG H+  +L     +  +  + +GG
Sbjct: 191 RIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGG 243


>04_03_0946 +
           20975955-20976095,20976189-20976330,20976449-20976588,
           20976893-20977090,20977195-20977392,20977484-20977519,
           20978374-20978496,20978589-20978694,20978869-20978966,
           20979041-20979145,20979240-20979332,20979842-20979900,
           20979984-20980068,20980144-20980503,20980606-20980728,
           20981203-20981289,20981372-20981590
          Length = 770

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 296 RKSVVLQSGHHFAWLLKYKTINVVRRVGSGAHASVALQHYIGVRXSENETAGG 454
           R + +  +   F W+LK  +++ + R  SG H+  +L     +  +  + +GG
Sbjct: 191 RIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGG 243


>03_04_0201 -
           18409088-18409306,18409389-18409475,18409950-18410072,
           18410175-18410534,18410610-18410694,18410780-18410838,
           18411350-18411442,18411537-18411641,18411716-18411813,
           18411988-18412093,18412186-18412308,18413163-18413198,
           18413290-18413487,18413592-18413789,18414094-18414233,
           18414356-18414497,18414591-18414731
          Length = 770

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 296 RKSVVLQSGHHFAWLLKYKTINVVRRVGSGAHASVALQHYIGVRXSENETAGG 454
           R + +  +   F W+LK  +++ + R  SG H+  +L     +  +  + +GG
Sbjct: 191 RIASIFSTTESFLWILKICSLSTIMREFSGMHSVASLPFKDLILSASEKNSGG 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,436,555
Number of Sequences: 37544
Number of extensions: 211961
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)