Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i18
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    30   0.95 
U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    28   2.9  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   3.8  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   3.8  
Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 329 FAWLLKYKTINVVRRVGSGAHASVALQHYIGVRXSENETAGGA 457
           F W  K+  IN++++VG GA+  V    + G     N+T  GA
Sbjct: 123 FFWEFKHSQINLIKKVGKGAYGEV----FKGTVTRGNKTFNGA 161


>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 106 FPEYSKLVYYSKAIKNFE-MHNEMIIYYDLK 17
           F E   + Y S+ I   E MHN  ++Y DLK
Sbjct: 290 FTEQEMIFYASEVILGLEHMHNRFVVYRDLK 320


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -2

Query: 237 TAAQSRFLRDLQLTIIANCVKKLNCIIKIPCYIVPNAGLPTFIIFLNTLNLC 82
           TA  +  ++D++    ANC K      +   Y  PN   P       TL+ C
Sbjct: 145 TATPAAVVQDMKTAAAANCPKTCGLCCQTDAYYCPNVAYPRLNCASITLSQC 196


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 388  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 284
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1947 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 1983


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 388  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 284
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1947 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 1983


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 388  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 284
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1966 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 2002


>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -1

Query: 418 NIVLQRYRSMCTRPDAADDVNCFILQEPSEMMAALQDNRFSGIKGTVFATVKVKKFTEVL 239
           N+    + ++ T+ +A  +   F   +P+E   A+QD+RF  +        KV  F  V 
Sbjct: 31  NVGKSTFFNVLTKSEAQAENFPFCTIDPNESRVAVQDDRFDWLVNHYKPASKVPAFLNVT 90

Query: 238 D 236
           D
Sbjct: 91  D 91


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 227 CAAVQYLGKFFDFNSGKHGSFDTRKSVVLQSGHHFA 334
           C  V Y  KFF+ ++G +  FD R       G HF+
Sbjct: 616 CVLVDYKPKFFNPHTGLYRMFDDRGFSYYTMGLHFS 651


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 227 CAAVQYLGKFFDFNSGKHGSFDTRKSVVLQSGHHFA 334
           C  + Y  KF++  +G +  FD +      SG H +
Sbjct: 295 CVLIDYAEKFYNATTGTYRLFDEKGFTYFTSGTHLS 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,678
Number of Sequences: 27780
Number of extensions: 192290
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)