Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i16
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    28   7.0  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   9.3  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   9.3  

>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
 Frame = -2

Query: 821 YLARERFFYQYIFPVSLEHTTEVKELKIDDHNCKVFEIIRRIIRNHKEPNE--RIQTIDL 648
           YLAR    + YI P+SL    ++ +L           I   ++R+   P E  RI  +  
Sbjct: 372 YLARFILLFSYIIPISLRTNVDMAKLFYSWQIGHDHHIPETVVRSSTIPEELGRISFLLS 431

Query: 647 STTGGLVLRETYTNIVLQRYRSMCTRPDAADDVNCFILQEPSEMMAALQDNRFSG-IKGT 471
             TG L   E +   +     ++    DA ++V   +    S   +AL  + FS  +K  
Sbjct: 432 DKTGTLTKNEMHFKKI--HLGTVAFSGDALEEVEQHV---KSAYDSALVKHPFSAKLKNA 486

Query: 470 VFATVKVKKFTEVLDGGAITF 408
           V +       T VL+ G +++
Sbjct: 487 VESLALCHNVTPVLENGELSY 507


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 519 FAWLLKYKTINVVRRVGSGAHASVALQHYIGVRFSENETAGGA 647
           F W  K+  IN++++VG GA+  V    + G     N+T  GA
Sbjct: 123 FFWEFKHSQINLIKKVGKGAYGEV----FKGTVTRGNKTFNGA 161


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 779 VSLEHTTEVKELKIDDHNCKVFEIIRRIIRNH 684
           +   HTTE    KI+DHN  VF +  +  ++H
Sbjct: 67  IKAPHTTESSMKKIEDHNTLVFIVDEKANKHH 98


>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 296 FPEYSKLVYYSKAIKNFE-MHNEMIIYYDLK 207
           F E   + Y S+ I   E MHN  ++Y DLK
Sbjct: 290 FTEQEMIFYASEVILGLEHMHNRFVVYRDLK 320


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 427 TAAQSRFLRDLQLTIIANCVKKLNCIIKIPCYIVPNAGLPTFIIFLNTLNLC 272
           TA  +  ++D++    ANC K      +   Y  PN   P       TL+ C
Sbjct: 145 TATPAAVVQDMKTAAAANCPKTCGLCCQTDAYYCPNVAYPRLNCASITLSQC 196


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 578  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 474
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1947 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 1983


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 578  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 474
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1947 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 1983


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 578  CTRPDAADDVNCFILQEPSEM--MAALQDNRFSGIKG 474
            CTRP+ +  VN F + EPS++  M A   N  S I+G
Sbjct: 1966 CTRPEYSIMVNKFEILEPSKLLTMVANATNTESSIRG 2002


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,519
Number of Sequences: 27780
Number of extensions: 332818
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)