Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i14
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.65 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    29   0.86 
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    27   2.6  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.6  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   3.5  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   4.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   6.1  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 445 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 558
           DGFV++LPYD V     +  L R+G+ +     W  A  F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 116 TNRNPFYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTES 289
           T+   +Y+S + L+   RY +A+  +      HP D     L K +Q+ S + ++ ES
Sbjct: 134 THAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQKKSDDFEKRES 191


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 867 KNLPLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 745
           +  P F  + S+ P   +LIVN    + +   WT   +D +
Sbjct: 104 RTFPEFSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 711 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 583
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 464 SHMTRFTNDSNELVYSLWMFMIGQ 535
           SH  +F ND  E  Y  W F+  Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 582 GMNNEYRISLAKKGGGCPIMNIHS 511
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -1

Query: 825 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 709
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,311
Number of Sequences: 5004
Number of extensions: 78475
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)