Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i14
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223...    29   4.9  
11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220...    29   4.9  
10_07_0019 + 11931519-11932310                                         28   8.5  

>12_01_0294 +
           2230539-2230870,2232179-2232574,2232676-2232834,
           2233109-2233505
          Length = 427

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 98  KQPLFETNRNPFYKSIEDLIFKFR 169
           K  +FE N NP  K +  LIFKFR
Sbjct: 152 KSSIFEVNGNPITKHMGFLIFKFR 175


>11_01_0293 +
           2207782-2208148,2208515-2208567,2208622-2208698,
           2209377-2209772,2209953-2210111,2210522-2210933
          Length = 487

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 98  KQPLFETNRNPFYKSIEDLIFKFR 169
           K  +FE N NP  K +  LIFKFR
Sbjct: 207 KSSIFEVNGNPITKHMGFLIFKFR 230


>10_07_0019 + 11931519-11932310
          Length = 263

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 435 RCKRWVCRSSPI*RG 479
           RC+RW CRS P  RG
Sbjct: 39  RCRRWWCRSEPTSRG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,316,124
Number of Sequences: 37544
Number of extensions: 494263
Number of successful extensions: 1161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)