Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i12
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   1.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   2.3  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    23   5.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    23   7.1  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    22   9.4  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 44  LFNYIMSTIHVDYTF 88
           LFNY++S IH D ++
Sbjct: 527 LFNYVLSLIHFDMSY 541


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 11 MFFILQYFLYNLFNYIMSTIH 73
          +FF+  +F   L+++I +T+H
Sbjct: 21 LFFVCSFFFPLLYSFIFATLH 41


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 5   LYMFFILQYFLYNLFN 52
           LY++F+  + LYN F+
Sbjct: 413 LYLYFVSHFSLYNAFS 428


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 312

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 94 IAKRVIDVDCTHNVVKEVIQEV 29
          +A +V+D+D T + ++ + QE+
Sbjct: 32 VALKVVDLDATKDQIETLTQEI 53


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 5   LYMFFILQYFLYNLFNYIMSTI 70
           L +FF+  Y  Y +FN I S +
Sbjct: 750 LILFFLDTYLWYIIFNTIFSVL 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,598
Number of Sequences: 5004
Number of extensions: 3343
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)