Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i12
         (101 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    27   4.6  
AY113442-1|AAM29447.1|  803|Drosophila melanogaster RE28849p pro...    26   6.1  
AY071446-1|AAL49068.1|  803|Drosophila melanogaster RE52979p pro...    26   6.1  
AE014297-1358|AAF54682.3|  895|Drosophila melanogaster CG6834-PA...    26   6.1  

>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
            isoform D protein.
          Length = 11707

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 100  RKIAKRVIDVDCTHNVVKEVIQE 32
            RKI KRV+ +D   ++ +EV++E
Sbjct: 8254 RKIIKRVVIIDGKEHITEEVVEE 8276


>AY113442-1|AAM29447.1|  803|Drosophila melanogaster RE28849p
           protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  NLFNYIMSTIHVDYTFSYF 97
           +LF  I++++H+DY   YF
Sbjct: 257 DLFYLILTSVHIDYKLDYF 275


>AY071446-1|AAL49068.1|  803|Drosophila melanogaster RE52979p
           protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  NLFNYIMSTIHVDYTFSYF 97
           +LF  I++++H+DY   YF
Sbjct: 257 DLFYLILTSVHIDYKLDYF 275


>AE014297-1358|AAF54682.3|  895|Drosophila melanogaster CG6834-PA
           protein.
          Length = 895

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  NLFNYIMSTIHVDYTFSYF 97
           +LF  I++++H+DY   YF
Sbjct: 349 DLFYLILTSVHIDYKLDYF 367


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,607,768
Number of Sequences: 53049
Number of extensions: 26349
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 24,988,368
effective HSP length: 15
effective length of database: 24,192,633
effective search space used: 435467394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)