Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i12
         (101 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z50176-1|CAA90538.2|  408|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    25   7.2  
Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z72508-6|CAA96643.1|  415|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AL023835-6|CAA19483.1|  144|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 2   LLYMFFILQYFLYNLFNYIMSTIHVDYTFSYFS 100
           LL++   + Y +  +FNY++S + ++    YFS
Sbjct: 109 LLFLITCILYVISEVFNYLISILALEKFIVYFS 141


>Z50176-1|CAA90538.2|  408|Caenorhabditis elegans Hypothetical
          protein C09G1.1 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 11 MFFILQYFLYNLFNYIMSTI 70
          +FF + + L+NLF+Y+   I
Sbjct: 20 LFFFVHHLLFNLFSYLKGVI 39


>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 2   LLYMFFILQYFLYNLFNYIMSTIHVDYTFSYFS 100
           +LY ++ +   ++ +FN +++ + V   F Y+S
Sbjct: 98  VLYHYYFISCVIFPVFNILLTLLAVQRFFIYYS 130


>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 17  FILQYFLYNLFNYIMSTIHVDYTFS 91
           +I+ +F +N+F+ + + +HV   FS
Sbjct: 173 YIVIFFTFNIFSILSAILHVPMYFS 197


>Z72508-6|CAA96643.1|  415|Caenorhabditis elegans Hypothetical
           protein F28H7.7 protein.
          Length = 415

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   LYMFFILQYFLYNLFNYIMSTIHVDYTFSYF 97
           LY+FFIL +F+     Y +   + D+  S F
Sbjct: 11  LYIFFILLFFVILSVLYSIEVFNYDFVSSNF 41


>AL023835-6|CAA19483.1|  144|Caenorhabditis elegans Hypothetical
          protein Y37A1B.6 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 2  LLYMFFILQYFLYNLFNYIMSTIH 73
          + Y  F+L YF  N+FN   + IH
Sbjct: 20 IFYYCFMLHYFGKNMFNSNFADIH 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,076
Number of Sequences: 27780
Number of extensions: 17411
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)